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The map label for this gene is lptF [H]

Identifier: 238921310

GI number: 238921310

Start: 3343597

End: 3344697

Strand: Reverse

Name: lptF [H]

Synonym: NT01EI_3454

Alternate gene names: 238921310

Gene position: 3344697-3343597 (Counterclockwise)

Preceding gene: 238921317

Following gene: 238921309

Centisome position: 87.73

GC content: 59.95

Gene sequence:

>1101_bases
GTGATCATCATTAGATATCTAGTCCGGGAAACCGTTAAAAGCCAGGTCGCTATCCTGTTTATTCTGCTATTGATCTTTTT
TTGCCAAAAGATGGTGCGGATTTTAGGGGCGGTGGTGAACGGTGATATCCCGACCAACCTGGTCTTTTCCCTGCTCGGGC
TGGGAATACCTGAGATGGCCCAGCTCATTCTTCCGCTCAGCCTGTTTCTGGGGCTGTTGATGACGTTGGGCAGGCTGTAC
ACGGAGAGCGAGATCACGGTGATGCACGCCTGCGGTCTGAGCAAGGCGGTACTGGTGAAGGCGGCGATGGTGCTGGCCTT
TATTACCGGTGCGCTTGCGCTGGTCAACGCCTTCTGGCTGAGCCCGTGGTCCTCGCTGCACTCGGATGAGGTGATGGCTG
AGGCCCGGGCCAATCCCGGACTGGCATCGCTGGCGGAGGGGCAGTTTCAGTCCTCGCAGGACGGCAACTACGTGCTGTTT
GTCGGCAATGTGAAGGACAAGAAATTCCAGAATGTCTTCCTGGCCCAGCTGCGCCCCAGCGGCTCCCAGCGTCCGTCGGT
GGTGGTGGCCGACAGCGGCCATCTGGTGGAGATGAAGGATGGCGCGCAGAAGGTGGTGCTGGACAGCGGCACCCGCTATG
AGGGTACCGCCATGCTGCGCGACTTCCGTATCACCGACTTTGTCGACTATTCGGCGATTATCGGCCATAAATCGGCGATG
CTGGATCCCAATAACGCCGATCAGGCCAGCATGGAGGCCCTGTGGCACTCGCAGGAGCCGAGCTTCCGCGCTGAGTTCCA
CTGGCGCCTGACCCTGGTGTTCTCGGTGATCGTGATGGCGCTGATGGTGGTACCGCTCAGCGTGGTTAACCCGCGCCAGG
GGCGGGTGCTGTCGATGTTACCGGCGATGTTGCTGTACCTGATCTTCTTCCTGCTGCAGAGCTCCCTGCGCTCCAATGGC
GGCAAGGACAAGCTGGACCCGATGATCTGGATGTGGGCGGTGAACGGTTTCTACCTGCTGCTGGCCGTCGTGCTTAACCT
GTGGGATACCATCCCGCTACGCCGCCTGCGCGCGCGCCTGAGCGGAAAAGGAGTGGCCTGA

Upstream 100 bases:

>100_bases
CTGATTGTTACCGCTGCCATAATCATCATGAAAATGGCGCGTTAGCGTAGAAATTATCTATTTTCCTGCAAAAATACAAG
TTTTCACAGGCGTAATAAGC

Downstream 100 bases:

>100_bases
TGTTTGGCGTTCTCGATCGTTATATTGGCCGCACCATCTTCAACACCATCATGATGACCCTGTTCATGCTGGTGTCGCTG
TCGGGCATCATCAAGTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLY
TESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWLSPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLF
VGNVKDKKFQNVFLAQLRPSGSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM
LDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNG
GKDKLDPMIWMWAVNGFYLLLAVVLNLWDTIPLRRLRARLSGKGVA

Sequences:

>Translated_366_residues
MIIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLY
TESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWLSPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLF
VGNVKDKKFQNVFLAQLRPSGSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM
LDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNG
GKDKLDPMIWMWAVNGFYLLLAVVLNLWDTIPLRRLRARLSGKGVA
>Mature_366_residues
MIIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLY
TESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWLSPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLF
VGNVKDKKFQNVFLAQLRPSGSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM
LDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNG
GKDKLDPMIWMWAVNGFYLLLAVVLNLWDTIPLRRLRARLSGKGVA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=364, Percent_Identity=72.8021978021978, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40517; Mature: 40517

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVKDKKFQNVFLAQLRPS
CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
GSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM
CCCCCEEEEECCCCEEEECCCCCEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHCCCHHC
LDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGRVLSML
CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWAVNGFYLLLAVVLNLWDTIPLRRLRARL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SGKGVA
CCCCCC
>Mature Secondary Structure
MIIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVKDKKFQNVFLAQLRPS
CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
GSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM
CCCCCEEEEECCCCEEEECCCCCEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHCCCHHC
LDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGRVLSML
CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWAVNGFYLLLAVVLNLWDTIPLRRLRARL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SGKGVA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]