Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
---|---|
Accession | NC_012779 |
Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238921282
Identifier: 238921282
GI number: 238921282
Start: 3310544
End: 3311539
Strand: Reverse
Name: 238921282
Synonym: NT01EI_3425
Alternate gene names: NA
Gene position: 3311539-3310544 (Counterclockwise)
Preceding gene: 238921283
Following gene: 238921281
Centisome position: 86.86
GC content: 62.25
Gene sequence:
>996_bases ATGGGTGTTTCTCAAAGGATTAAAGGTTGGGCTGCGGCCTGTTTGCTGGCCGTTTCCTGCGTGGCTTCGCCGGCGTTTGC CGCGCAGTCCGGTAAGGATATGAGCATTTGGTTTGACGTCGGCGGTCCGGTGGGCGAGTCCTACGTGACGGTGGTGCAGA ATGGGGCCAAGCAGGCGGCCGAGGATCTGGGCGTCGATTTGCGTCTGGTTTACTCCGACTGGCAGCCGCAGAAGATGATC GAAAACTTTAAGCAGGCGCTGGCGGCCAAGCCGACCGGCATCGTGGTGATCGGCCTGCCGGGCGATACTGCCTACCAGCC GCTGATCAAGGAGGCCATCGATAAGGGGATCCTGGTGACCTCTATCGACACCGAGCTGCCGGGCACCATGGCAGCCGAGC AGAGCAAGGGTTTTGGCTACGTTGGTGATAACAACGCGGTGCGCGGTCTGCGCCTGGCCAAAGAGGCGGTGCGCCGCAGC GGGCTGAAGGCGGGCGATCGTGCGCTGGTGTGGGGGCTTAAAGATCGCGCCGCCCGCAGCGAGTCAACCCTGGGGCTGAT TAAGGGGCTGGAGCAGGCCGGTGTCAAGGTCGACTTCCTGCAGATTTCGCCGGAGGTGGACAAAGATCCCTCTCTGGGTG CACCGGCCTTTACCGCCTATATGGCGACCCACCCGGATGTGAAGATGGTACTGGTGGACCACGGTGCCCTGACCGCGCAG ATGGGTAACCTGATGCGCAACGCCGGGATCAAGCCGGGCGAGGTCTACGTGGCCGGTTTCAGCCTGTCGCCGGCCACCGC CGAGGCGATTAAATCCGGCTATGTGCAGCTGGTGGCCGATGCCCAGCCCTACCTGATGGGTTACTTCTCCGTGGTGCAGA TCGTCCTGAGCAAGCGCTATGGCTTTTCCGGTCTGGATATCAACACCGGCGCCGGGTTTGTCTCTCAGGAGAATATCGGA CTGATCGCGCCGCTGGCCAGCAAGGGTCTGCGTTGA
Upstream 100 bases:
>100_bases GCGACAGCGACGCCGTTGTCTCCCTCGTCCCCGACTGCGGTCTGGTGGCGCCCGCTCCTGCGGCGGCCGTCATACCCTGC CAATAATAAAGGTGATAATG
Downstream 100 bases:
>100_bases TGACGCAGCCTGCGCTGGAACTGATCGGGCTGAACAAGTGGTTCGGCCCGGTTCATGCCCTGCGCGATATCCATTTTCAG CTATTCCCCGGTGAGGTGGT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MGVSQRIKGWAAACLLAVSCVASPAFAAQSGKDMSIWFDVGGPVGESYVTVVQNGAKQAAEDLGVDLRLVYSDWQPQKMI ENFKQALAAKPTGIVVIGLPGDTAYQPLIKEAIDKGILVTSIDTELPGTMAAEQSKGFGYVGDNNAVRGLRLAKEAVRRS GLKAGDRALVWGLKDRAARSESTLGLIKGLEQAGVKVDFLQISPEVDKDPSLGAPAFTAYMATHPDVKMVLVDHGALTAQ MGNLMRNAGIKPGEVYVAGFSLSPATAEAIKSGYVQLVADAQPYLMGYFSVVQIVLSKRYGFSGLDINTGAGFVSQENIG LIAPLASKGLR
Sequences:
>Translated_331_residues MGVSQRIKGWAAACLLAVSCVASPAFAAQSGKDMSIWFDVGGPVGESYVTVVQNGAKQAAEDLGVDLRLVYSDWQPQKMI ENFKQALAAKPTGIVVIGLPGDTAYQPLIKEAIDKGILVTSIDTELPGTMAAEQSKGFGYVGDNNAVRGLRLAKEAVRRS GLKAGDRALVWGLKDRAARSESTLGLIKGLEQAGVKVDFLQISPEVDKDPSLGAPAFTAYMATHPDVKMVLVDHGALTAQ MGNLMRNAGIKPGEVYVAGFSLSPATAEAIKSGYVQLVADAQPYLMGYFSVVQIVLSKRYGFSGLDINTGAGFVSQENIG LIAPLASKGLR >Mature_330_residues GVSQRIKGWAAACLLAVSCVASPAFAAQSGKDMSIWFDVGGPVGESYVTVVQNGAKQAAEDLGVDLRLVYSDWQPQKMIE NFKQALAAKPTGIVVIGLPGDTAYQPLIKEAIDKGILVTSIDTELPGTMAAEQSKGFGYVGDNNAVRGLRLAKEAVRRSG LKAGDRALVWGLKDRAARSESTLGLIKGLEQAGVKVDFLQISPEVDKDPSLGAPAFTAYMATHPDVKMVLVDHGALTAQM GNLMRNAGIKPGEVYVAGFSLSPATAEAIKSGYVQLVADAQPYLMGYFSVVQIVLSKRYGFSGLDINTGAGFVSQENIGL IAPLASKGLR
Specific function: Unknown
COG id: COG1879
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34866; Mature: 34734
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVSQRIKGWAAACLLAVSCVASPAFAAQSGKDMSIWFDVGGPVGESYVTVVQNGAKQAA CCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH EDLGVDLRLVYSDWQPQKMIENFKQALAAKPTGIVVIGLPGDTAYQPLIKEAIDKGILVT HHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEE SIDTELPGTMAAEQSKGFGYVGDNNAVRGLRLAKEAVRRSGLKAGDRALVWGLKDRAARS EECCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCC ESTLGLIKGLEQAGVKVDFLQISPEVDKDPSLGAPAFTAYMATHPDVKMVLVDHGALTAQ HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHEECCCCEEEEEEECCHHHHH MGNLMRNAGIKPGEVYVAGFSLSPATAEAIKSGYVQLVADAQPYLMGYFSVVQIVLSKRY HHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC GFSGLDINTGAGFVSQENIGLIAPLASKGLR CCCCCEECCCCCCEECCCCCEEECHHHCCCC >Mature Secondary Structure GVSQRIKGWAAACLLAVSCVASPAFAAQSGKDMSIWFDVGGPVGESYVTVVQNGAKQAA CHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH EDLGVDLRLVYSDWQPQKMIENFKQALAAKPTGIVVIGLPGDTAYQPLIKEAIDKGILVT HHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEE SIDTELPGTMAAEQSKGFGYVGDNNAVRGLRLAKEAVRRSGLKAGDRALVWGLKDRAARS EECCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCC ESTLGLIKGLEQAGVKVDFLQISPEVDKDPSLGAPAFTAYMATHPDVKMVLVDHGALTAQ HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHEECCCCEEEEEEECCHHHHH MGNLMRNAGIKPGEVYVAGFSLSPATAEAIKSGYVQLVADAQPYLMGYFSVVQIVLSKRY HHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC GFSGLDINTGAGFVSQENIGLIAPLASKGLR CCCCCEECCCCCCEECCCCCEEECHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA