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The map label for this gene is appC [H]

Identifier: 238921259

GI number: 238921259

Start: 3288542

End: 3290083

Strand: Reverse

Name: appC [H]

Synonym: NT01EI_3402

Alternate gene names: 238921259

Gene position: 3290083-3288542 (Counterclockwise)

Preceding gene: 238921260

Following gene: 238921258

Centisome position: 86.3

GC content: 60.38

Gene sequence:

>1542_bases
ATGTGGGATGTTATTGACTTATCGCGATGGCAGTTTGCGCTGACCGCGATGTATCACTTCTTGTTCGTTCCCCTTACCCT
GGGGCTGATTTTTTTGCTGGCCGTCATGGAAACCATCTACGTGGTGACCGGCAAAGCGATCTACCGCGATATGACGCGTT
TCTGGGGTAAGCTGTTCGGGATCAACTTTGCTCTGGGCGTGGCGACTGGCCTGACCATGGAGTTTCAGTTCGGTACCAAC
TGGTCATTCTACTCCAACTACGTGGGCGATATTTTCGGCGCGCCACTGGCGATGGAGGCGCTGATGGCCTTCTTCCTCGA
GTCCACCTTTGTCGGCCTGTTCTTTTTTGGCTGGCAGCGGCTGAATAAGTATCAGCATCTGCTGGTGACCTGGCTGGTGG
CCTTCGGTTCCAATATCTCCGCCCTGTGGATCCTGAACGCCAACGGCTGGATGCAGTTTCCGACCGGGGCCCACTTTAAT
ATCGACACCCTGCGCATGGAGATGACCAGCTTCAGTGAGCTGGTGTTTAATCCGATAAGCCAGGTGAAGTTTGTCCATAC
CGTGATGTCCGGCTATGTGGCCGGGGCGATGTTCATCATGTCCATCAGCGCCTGGTATCTACTGCGCGGCCGCGAGCGTG
ACGTGGCATTACGCTCCTTTGCCATCGGTTCGGTATTCGGCACCCTGGCGATTCTGGGGACGCTACAGCTGGGCGACAGC
TCCGCCTATGAGGTGGCCAGGGTTCAGCCGGTGAAGCTGGCGGCGATGGAAGGGGAGTGGCAGACCGAACCCGCGCCTGC
GCCGTTCCACCTGGTGGCCTGGCCGGAGCAAGAGCAGGAGCGTAACGCCTTCGCCATCAAGGTACCGGCTCTACTCGGCC
TGTTGGCGACCCACTCGCTGGATACGCCGGTGCCGGGGCTGAAGAATCTGATGGCCGACGCCCTGCCGCGTCTGCAGCGC
GGGCGCGAGGCCTGGCTGCTGATGAATACCCTCTCGCAGGGCAACCGCTCGCCGCAGGTGCTGAGCGCGTTCCGCGCCGT
CGAAAGCGATCTGGGCTACGGCATGCTGCTGAAGCAGTATGCGCCGGATATGAACAATGTGACGCCGGCGCAGTATCAGG
CGGCGCAGCGCGGCCTGATCCCGCAGGTGGCGCCGGTGTTCTGGAGCTTCCGTATCATGGTGGGCTGCGGCTCGCTGCTG
CTGCTGGTGATGCTGATTGCGCTGATTCAGACGCTGCGGGTGCGCATCGATCAGCACCGCTGGGTGCTGCGTATGGTGTT
CTATAGCCTGCCGCTGCCGTGGATTGCCATCGAGGCCGGCTGGTTTATGACGGAGTTTGGCCGTCAGCCCTGGGCAATTC
AGGATATCCTGCCGACCTATTCCGCTCACTCGGCCCTGACGGTAGGCCAGCTGGCCTTCTCGATGGGGCTGATCCTGGGG
CTTTACACCCTGTTCTTAATCGCCGAGGTCTATCTGATGCAGAAGTACGCGCGTCTTGGACCGAGCGCGATGCAGAGTGA
ACAACCGGCGCAGCAGGGGTAA

Upstream 100 bases:

>100_bases
GGGGGAGTCTCCCCGTTGACAGGGCGTACGTCCGGGCATGCGTTGGCGCGGCGATCCGGCCTGGTCCATATTCCCCACCT
TATCGCCTACAGGAGTCCGC

Downstream 100 bases:

>100_bases
AGGAGACTGTTATGTTTGATTATGAAACGCTGCGGTTTATTTGGTGGCTATTGATCGGCGTGATCCTGGTGGCCTTTATG
GTGACCGATGGATTTGACAT

Product: cytochrome D ubiquinol oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit I [H]

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MWDVIDLSRWQFALTAMYHFLFVPLTLGLIFLLAVMETIYVVTGKAIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQFPTGAHFN
IDTLRMEMTSFSELVFNPISQVKFVHTVMSGYVAGAMFIMSISAWYLLRGRERDVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVARVQPVKLAAMEGEWQTEPAPAPFHLVAWPEQEQERNAFAIKVPALLGLLATHSLDTPVPGLKNLMADALPRLQR
GREAWLLMNTLSQGNRSPQVLSAFRAVESDLGYGMLLKQYAPDMNNVTPAQYQAAQRGLIPQVAPVFWSFRIMVGCGSLL
LLVMLIALIQTLRVRIDQHRWVLRMVFYSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTVGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQSEQPAQQG

Sequences:

>Translated_513_residues
MWDVIDLSRWQFALTAMYHFLFVPLTLGLIFLLAVMETIYVVTGKAIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQFPTGAHFN
IDTLRMEMTSFSELVFNPISQVKFVHTVMSGYVAGAMFIMSISAWYLLRGRERDVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVARVQPVKLAAMEGEWQTEPAPAPFHLVAWPEQEQERNAFAIKVPALLGLLATHSLDTPVPGLKNLMADALPRLQR
GREAWLLMNTLSQGNRSPQVLSAFRAVESDLGYGMLLKQYAPDMNNVTPAQYQAAQRGLIPQVAPVFWSFRIMVGCGSLL
LLVMLIALIQTLRVRIDQHRWVLRMVFYSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTVGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQSEQPAQQG
>Mature_513_residues
MWDVIDLSRWQFALTAMYHFLFVPLTLGLIFLLAVMETIYVVTGKAIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQFPTGAHFN
IDTLRMEMTSFSELVFNPISQVKFVHTVMSGYVAGAMFIMSISAWYLLRGRERDVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVARVQPVKLAAMEGEWQTEPAPAPFHLVAWPEQEQERNAFAIKVPALLGLLATHSLDTPVPGLKNLMADALPRLQR
GREAWLLMNTLSQGNRSPQVLSAFRAVESDLGYGMLLKQYAPDMNNVTPAQYQAAQRGLIPQVAPVFWSFRIMVGCGSLL
LLVMLIALIQTLRVRIDQHRWVLRMVFYSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTVGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQSEQPAQQG

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=512, Percent_Identity=90.0390625, Blast_Score=937, Evalue=0.0,
Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=62.8458498023715, Blast_Score=675, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57713; Mature: 57713

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDVIDLSRWQFALTAMYHFLFVPLTLGLIFLLAVMETIYVVTGKAIYRDMTRFWGKLFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQR
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNKYQHLLVTWLVAFGSNISALWILNANGWMQFPTGAHFNIDTLRMEMTSFSELVFNPIS
HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVMSGYVAGAMFIMSISAWYLLRGRERDVALRSFAIGSVFGTLAILGTLQLGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAYEVARVQPVKLAAMEGEWQTEPAPAPFHLVAWPEQEQERNAFAIKVPALLGLLATHSL
CCHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHCCCCEEEEHHHHHHHHHHCCC
DTPVPGLKNLMADALPRLQRGREAWLLMNTLSQGNRSPQVLSAFRAVESDLGYGMLLKQY
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
APDMNNVTPAQYQAAQRGLIPQVAPVFWSFRIMVGCGSLLLLVMLIALIQTLRVRIDQHR
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLRMVFYSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTVGQLAFSMGLILG
HHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LYTLFLIAEVYLMQKYARLGPSAMQSEQPAQQG
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
>Mature Secondary Structure
MWDVIDLSRWQFALTAMYHFLFVPLTLGLIFLLAVMETIYVVTGKAIYRDMTRFWGKLFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQR
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNKYQHLLVTWLVAFGSNISALWILNANGWMQFPTGAHFNIDTLRMEMTSFSELVFNPIS
HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVMSGYVAGAMFIMSISAWYLLRGRERDVALRSFAIGSVFGTLAILGTLQLGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAYEVARVQPVKLAAMEGEWQTEPAPAPFHLVAWPEQEQERNAFAIKVPALLGLLATHSL
CCHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHCCCCEEEEHHHHHHHHHHCCC
DTPVPGLKNLMADALPRLQRGREAWLLMNTLSQGNRSPQVLSAFRAVESDLGYGMLLKQY
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
APDMNNVTPAQYQAAQRGLIPQVAPVFWSFRIMVGCGSLLLLVMLIALIQTLRVRIDQHR
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLRMVFYSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTVGQLAFSMGLILG
HHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LYTLFLIAEVYLMQKYARLGPSAMQSEQPAQQG
HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]