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The map label for this gene is appB [H]

Identifier: 238921258

GI number: 238921258

Start: 3287394

End: 3288530

Strand: Reverse

Name: appB [H]

Synonym: NT01EI_3401

Alternate gene names: 238921258

Gene position: 3288530-3287394 (Counterclockwise)

Preceding gene: 238921259

Following gene: 238921257

Centisome position: 86.26

GC content: 62.18

Gene sequence:

>1137_bases
ATGTTTGATTATGAAACGCTGCGGTTTATTTGGTGGCTATTGATCGGCGTGATCCTGGTGGCCTTTATGGTGACCGATGG
ATTTGACATGGGGGTCGGTTGCCTGCTGCCGCTGGTGGCGCGCAGCGACGATGAGCGGCGCGTGCTGATCAACAGCGTCG
GCGCCCACTGGGAGGGCAACCAGGTGTGGTTGATCCTGGCCGGCGGCGCGCTGTTCGCCGCCTGGCCGCGGGTCTATGCC
GCCGCCTTTTCCGGCTTCTATGTGGCGATGATCCTGGTGCTGTGCGCCCTGTTCTTTCGTCCGCTGGCCTTTGACTACCG
GGGCAAGATCGCCGACGCGCGCTGGCGCACCCTGTGGGACACCGGGCTGGTGATCGGCAGTCTGGTGCCGCCGCTGGTGT
TTGGCGTGGCGTTCGGCAACCTGATCCAGGGCGTTCCCTTTGCCTTCACCCCACAGCTGCGCGTGGAGTACTTTGGCACC
TTCTGGCAGTTGCTGTCGCCCTTTGCCCTGCTGTGCGGGCTGCTCAGTCTGTGTATGGTGATCATGCAGGGCGGCGTCTG
GCTACAGCTGAAGACCGATGGCGTGATCCGTCAGCGGGCCCGCTCGGCGACCAACCGCAGCGCGCTGCTGGTAGTGCTCT
GCTTCCTGCTGGCCGGCTACTGGCTGTGGGTCGGTATCGATGGCTATGTGCTGCTCAGCCAGGATCCCAATGGCCCCTCC
AATCCGTTGATGAAGGCGGTGGCGGTGTTGCCCGGCGCCTGGATGAGTAACTTTATTCATTGGCCGCTGCTGCTGATCTT
CCCGCTGCTCGGCGTGCTGTGTCCGCTGCTGACCCTGTTCGCCAGCGCCCGCGGCCGTGGGGGGTGGGGATTTCTGCTGG
CCTCGCTGGCACAGGCCGGAGTGGTGTTTACCGCCGGGGTGACGCTGTTCCCATTTGTGATGCCCTCCAGTATTAACCCG
GTCTCCAGCCTGACGCTGTGGGACAGCACCTCCAGTCAGATGACGTTGAGTATCATGCTGGTGATCGTGCTGATCTTCCT
GCCGATCGTGCTGCTCTATACCCTGTGGAGCTACTATAAGATGCTGGGGCGGATTAACCCGGAGACTATCCGCCGTCATG
ATCATGAACTGTACTGA

Upstream 100 bases:

>100_bases
TCTTAATCGCCGAGGTCTATCTGATGCAGAAGTACGCGCGTCTTGGACCGAGCGCGATGCAGAGTGAACAACCGGCGCAG
CAGGGGTAAAGGAGACTGTT

Downstream 100 bases:

>100_bases
GGAGAGGGTGCGATGTGGTATTTACTGTGGTTTGTCGGCATTTTGCTGATGTGTTCGCTGTCTACCCTGATCCTGGTATG
GCTTGAGCCGAGGCTGAAAT

Product: cytochrome D ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLVARSDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIADARWRTLWDTGLVIGSLVPPLVFGVAFGNLIQGVPFAFTPQLRVEYFGT
FWQLLSPFALLCGLLSLCMVIMQGGVWLQLKTDGVIRQRARSATNRSALLVVLCFLLAGYWLWVGIDGYVLLSQDPNGPS
NPLMKAVAVLPGAWMSNFIHWPLLLIFPLLGVLCPLLTLFASARGRGGWGFLLASLAQAGVVFTAGVTLFPFVMPSSINP
VSSLTLWDSTSSQMTLSIMLVIVLIFLPIVLLYTLWSYYKMLGRINPETIRRHDHELY

Sequences:

>Translated_378_residues
MFDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLVARSDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIADARWRTLWDTGLVIGSLVPPLVFGVAFGNLIQGVPFAFTPQLRVEYFGT
FWQLLSPFALLCGLLSLCMVIMQGGVWLQLKTDGVIRQRARSATNRSALLVVLCFLLAGYWLWVGIDGYVLLSQDPNGPS
NPLMKAVAVLPGAWMSNFIHWPLLLIFPLLGVLCPLLTLFASARGRGGWGFLLASLAQAGVVFTAGVTLFPFVMPSSINP
VSSLTLWDSTSSQMTLSIMLVIVLIFLPIVLLYTLWSYYKMLGRINPETIRRHDHELY
>Mature_378_residues
MFDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLVARSDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIADARWRTLWDTGLVIGSLVPPLVFGVAFGNLIQGVPFAFTPQLRVEYFGT
FWQLLSPFALLCGLLSLCMVIMQGGVWLQLKTDGVIRQRARSATNRSALLVVLCFLLAGYWLWVGIDGYVLLSQDPNGPS
NPLMKAVAVLPGAWMSNFIHWPLLLIFPLLGVLCPLLTLFASARGRGGWGFLLASLAQAGVVFTAGVTLFPFVMPSSINP
VSSLTLWDSTSSQMTLSIMLVIVLIFLPIVLLYTLWSYYKMLGRINPETIRRHDHELY

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=378, Percent_Identity=83.0687830687831, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=56.9920844327177, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42071; Mature: 42071

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLVARSDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIADARWRTLWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPLVFGVAFGNLIQGVPFAFTPQLRVEYFGTFWQLLSPFALLCGLLSLCMV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTDGVIRQRARSATNRSALLVVLCFLLAGYWLWVGIDGYVLLSQDPNGPS
HHCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
NPLMKAVAVLPGAWMSNFIHWPLLLIFPLLGVLCPLLTLFASARGRGGWGFLLASLAQAG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
VVFTAGVTLFPFVMPSSINPVSSLTLWDSTSSQMTLSIMLVIVLIFLPIVLLYTLWSYYK
CHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINPETIRRHDHELY
HHHCCCHHHHHHCCCCCC
>Mature Secondary Structure
MFDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLVARSDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIADARWRTLWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPLVFGVAFGNLIQGVPFAFTPQLRVEYFGTFWQLLSPFALLCGLLSLCMV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTDGVIRQRARSATNRSALLVVLCFLLAGYWLWVGIDGYVLLSQDPNGPS
HHCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
NPLMKAVAVLPGAWMSNFIHWPLLLIFPLLGVLCPLLTLFASARGRGGWGFLLASLAQAG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
VVFTAGVTLFPFVMPSSINPVSSLTLWDSTSSQMTLSIMLVIVLIFLPIVLLYTLWSYYK
CHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINPETIRRHDHELY
HHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]