Click here to switch to the map view.

The map label for this gene is qseD [H]

Identifier: 238921247

GI number: 238921247

Start: 3275834

End: 3276754

Strand: Direct

Name: qseD [H]

Synonym: NT01EI_3390

Alternate gene names: 238921247

Gene position: 3275834-3276754 (Clockwise)

Preceding gene: 238921246

Following gene: 238921248

Centisome position: 85.93

GC content: 66.56

Gene sequence:

>921_bases
ATGGAGATAGGCTGGCTTGAAGACTTTCTGACACTGGCAGAACTGCGCAACTTTTCGCGCGCCGCCGCCAGCCGCCACAT
TACTCAACCCGCCTTCGGCCGCCATATCCGGGCGTTGGAGGAGAGCGTGGGGCAGCAGCTGGTCGATCGCAGCACCACCC
CGGTAACCCTGACGCCCGCCGGCTACCAGTTTCGCCTGTTGGCCCACGCCATGACCAACCAATGGCACGAGGGGCTTAAC
AACATCAACGGACGTCCGCAGGCCCTGCTCCATCCGGTACGTTTCAGTGCCCCACACTCCCTCTCCTCCCCTTTTCTGCT
CGATCTGATCGCCGCGGCCAGCGCAGACGACCCGGCGCCCTTACCCTTCGGCGTTGATATTCTGCGGGTGGACTTCGCCG
TCGAGGCGCTGATGGAGGGGGCCAGCGACTTCCTGCTGGCCTTTGATACCCACGCCCTGCTGCAGCCGCCGTTTGACAAC
CTGCTGCTCGGGCGCGGCGACCTGCTGCTGGTCTGCGCCCCTGATCCCGATGGACGCCCGCGTTTTCAGCCGGGAGAACA
ACCGGTGCCGGTGCTACGCTACACCCCGGACTCCTACAGCGCCCGTATGGTAGAGCGTCTGATGCCCCAGTATCCCTTCC
CCGCCCGACCGCTGTTTGAGGCCTCACTGTGCGATCTGCACCGTCAAATGGCGCTGCGTGGCCACGGCCTGACCTGGCTC
GCCGACTGCCAGATCGGCGCGGAGCTGGCGGAGGGTCGGCTGGTGGCCGTGGATCGCCAGCGCTGGTGCGTCCCCTATCA
GATCCGTCTCTATCGCAACCGCGCCCGCCTGCACCAGCGCGCCGAGGCCTTCTGGCAGCGCCTGGCACTACGCATCGCCG
CCGGCCACACCTTCTGGCCGCCGCCCGTCCCGGCAGCCTAA

Upstream 100 bases:

>100_bases
TATATTATTTGGTGATAATCTAGATACAGGGTTGTCATACCACTGCCCGAAAGGGCAGGATAGCGGAGAACATCCGGATA
ACCACGGAAGGGGAGAGTAG

Downstream 100 bases:

>100_bases
ACATTCCGCGCACCGCTGGGAAAGCGACCCCGGTGCCGAATCGGCCTGAGCCATGCCGGAATAGCATTTCACGCCCGGCG
TACGTTCCCCTATGATGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MEIGWLEDFLTLAELRNFSRAAASRHITQPAFGRHIRALEESVGQQLVDRSTTPVTLTPAGYQFRLLAHAMTNQWHEGLN
NINGRPQALLHPVRFSAPHSLSSPFLLDLIAAASADDPAPLPFGVDILRVDFAVEALMEGASDFLLAFDTHALLQPPFDN
LLLGRGDLLLVCAPDPDGRPRFQPGEQPVPVLRYTPDSYSARMVERLMPQYPFPARPLFEASLCDLHRQMALRGHGLTWL
ADCQIGAELAEGRLVAVDRQRWCVPYQIRLYRNRARLHQRAEAFWQRLALRIAAGHTFWPPPVPAA

Sequences:

>Translated_306_residues
MEIGWLEDFLTLAELRNFSRAAASRHITQPAFGRHIRALEESVGQQLVDRSTTPVTLTPAGYQFRLLAHAMTNQWHEGLN
NINGRPQALLHPVRFSAPHSLSSPFLLDLIAAASADDPAPLPFGVDILRVDFAVEALMEGASDFLLAFDTHALLQPPFDN
LLLGRGDLLLVCAPDPDGRPRFQPGEQPVPVLRYTPDSYSARMVERLMPQYPFPARPLFEASLCDLHRQMALRGHGLTWL
ADCQIGAELAEGRLVAVDRQRWCVPYQIRLYRNRARLHQRAEAFWQRLALRIAAGHTFWPPPVPAA
>Mature_306_residues
MEIGWLEDFLTLAELRNFSRAAASRHITQPAFGRHIRALEESVGQQLVDRSTTPVTLTPAGYQFRLLAHAMTNQWHEGLN
NINGRPQALLHPVRFSAPHSLSSPFLLDLIAAASADDPAPLPFGVDILRVDFAVEALMEGASDFLLAFDTHALLQPPFDN
LLLGRGDLLLVCAPDPDGRPRFQPGEQPVPVLRYTPDSYSARMVERLMPQYPFPARPLFEASLCDLHRQMALRGHGLTWL
ADCQIGAELAEGRLVAVDRQRWCVPYQIRLYRNRARLHQRAEAFWQRLALRIAAGHTFWPPPVPAA

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=289, Percent_Identity=34.9480968858132, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=26.4026402640264, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34326; Mature: 34326

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGWLEDFLTLAELRNFSRAAASRHITQPAFGRHIRALEESVGQQLVDRSTTPVTLTPA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GYQFRLLAHAMTNQWHEGLNNINGRPQALLHPVRFSAPHSLSSPFLLDLIAAASADDPAP
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCC
LPFGVDILRVDFAVEALMEGASDFLLAFDTHALLQPPFDNLLLGRGDLLLVCAPDPDGRP
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCHHHEEECCCCEEEEECCCCCCCC
RFQPGEQPVPVLRYTPDSYSARMVERLMPQYPFPARPLFEASLCDLHRQMALRGHGLTWL
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
ADCQIGAELAEGRLVAVDRQRWCVPYQIRLYRNRARLHQRAEAFWQRLALRIAAGHTFWP
ECCHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPVPAA
CCCCCC
>Mature Secondary Structure
MEIGWLEDFLTLAELRNFSRAAASRHITQPAFGRHIRALEESVGQQLVDRSTTPVTLTPA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GYQFRLLAHAMTNQWHEGLNNINGRPQALLHPVRFSAPHSLSSPFLLDLIAAASADDPAP
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCC
LPFGVDILRVDFAVEALMEGASDFLLAFDTHALLQPPFDNLLLGRGDLLLVCAPDPDGRP
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCHHHEEECCCCEEEEECCCCCCCC
RFQPGEQPVPVLRYTPDSYSARMVERLMPQYPFPARPLFEASLCDLHRQMALRGHGLTWL
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
ADCQIGAELAEGRLVAVDRQRWCVPYQIRLYRNRARLHQRAEAFWQRLALRIAAGHTFWP
ECCHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPVPAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]