| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is hypF [H]
Identifier: 238921140
GI number: 238921140
Start: 3159648
End: 3161972
Strand: Direct
Name: hypF [H]
Synonym: NT01EI_3281
Alternate gene names: 238921140
Gene position: 3159648-3161972 (Clockwise)
Preceding gene: 238921139
Following gene: 238921141
Centisome position: 82.88
GC content: 68.47
Gene sequence:
>2325_bases TTGGAACACAACGCCATCGCATTACGGATAAAAGGAAAGGTTCAGGGCGTCGGCTTTCGCCCCTATGTCTGGCAGATAGC CCAGACGCTGGGGCTACATGGCGAAGTCAGCAACGATGCTGGCGGCGTCTGGCTGGTGGTTCGTCTACCGGCGGATCTGG ACACGCTGATCCAGCGACTGTACGCAGACTGTCCGCCGCTGGCGCATATCGATACCATCGAACGGCACCCCTGGGCAGAG ACGCCCGCGGACGGCTTCCGGATCGTCGACAGCCGCCAGGGCGCCATGGATACCCAGATCGTGCCCGACGCTGCCACCTG CCCACGCTGCCTGGCCGAGATGCGCGACCCGGCCAACCGCCGCTACGGCTACCCGTTTATCAACTGTACCCACTGCGGTC CGCGTTTTACCATCATCCGCCGTATGCCCTACGATCGCCCCTTTACTGCCATGGCCGACTTTCCGCTGTGTCCAGCCTGC GCCCGCGAGTACCACGATCCCGCCGACCGACGCTTTCATGCCCAGCCGACCGCCTGCGCCCTCTGCGGCCCGACGATGTG GAGCTGCGGCGCCGACGGCGCCGACCGGCGCGAAGGCGAGGCGGCCTGGCAGGCTGTCACCCGGTCGCTGGATGCCGGAC ATATTGTCGCCGTCAAAGGGCTGGGGGGATTTCATCTGGCCTGTGACGCCGAAAATGACGCCGCCATCGCCCGCCTGCGC GAACGCAAGCGGCGCCCGGGAAAACCGCTGGCGCTGATGCTGCCCGACCTAAGCTGGCTGGCGCGCTACTGCCGCGCCGC GCCGGACGCCGGGCTGCAGGCCCTGCTGAGCAGCCCGGCGGCACCCATCGTCCTGGTCCCCGCCTCCGACGCGGTACCGG CGCAGGTGGCACCCGGCCTGGATGAGGTCGGCGTGATGCTGCCGGGCACGCCGCTGCACCACCTGCTGATGGCGCATATC GGACGGCCGCTGGTGATGACCTCCGGTAACGCCAGCGGCCAGCCGCCGGCGCTGGATAATGCCCAGGCGCTGGCGGATCT GGCGGGGATCGCCGATCTGTGGTTGCTGCACAACCGCGATATCGTCCAGCGCGCCGACGACTCGCTGGTGCGCTACGCGC CGGAGGGGAGCGAGATGCTGCGCCGGGCGCGCGGCTATGTGCCGGACACCATCGCGCTGCCCGCGTCCTTTAGCATGCTC CCGGACGTCGCCGCCGTCGGCGGCGATCTGAAAAACACCTTCTGCCTGCTGCAGCGCGGACGCGCCCTGCTCAGCCAGCA TCTGGGCGATCTGGGCGAGGCGCGCATTCAGCAGCAGTTCCTGCAGACCTGGCAGCTACTGCTGCAAACGTACCAGTTCA GCCCGCGCGCCATCGCCTGCGATCGCCACCCCGGCTACCACAGCCACAGGCTGGCGCAACAGCAGGCCGACGTGCGCGGG CTGCCGCTGATCGCGGTGCAGCATCACCATGCGCACCTGGCGGCCTGCATGGCCGAGCACGGGATTGCGCCGCAGGATAC CCCACTGATCGGCCTGGCGCTGGACGGCATCGGCTACGGTGAGTCGGGTGAACTCTGGGGCGGCGAGTGCCTGCGGGTTG ATTACCGGGGGTATACCCGCCTGGGCGGGCTGCCTGCGGTGGCGCTGCCCGGCGGCGATCTGGCCGCCCGCCAGCCCTGG CGTAACCTGCTGGCCCAGCTGCTGTGCTTTGTCCCCGACTGGCCGCGTTACCCGGAAACCCAGCGGATACAGGCAAAAAA CTGGCCGCTGCTGGCCCGGGCCATCGATCGCGAGCTGAACTGCCCGCGCGCCTCCTCCTGCGGCCGCCTGTTTGACGCGG CAGCGGCGGCGCTGGATATCTGTCACGAGCAGATAAGCTTTGAGGGCGAGGCGGCCTGCCGCCTGGAGGCGCAGGCCTGG CAGGCCTGGCCCCAAGAGACGCCGGTCACCCTGAAGATCGACGAACAGGGCGAGCTGGCAATGGGCGATTTCTGGCGCGA CTGGCTAAGCTGGCAGACGTCGGTGCCCCTGCGCGCACTGGCCTTTCACCGGGCTATCGCTGACGGACTGGCGGCGCTGC TGCGCTACCACGCCGAGCGCGAAGGGTGCCAAACGCTGGTATTGTCCGGGGGGGTACTGCACAATCGACTGCTGCGTCAG CTGTTGCTGGCACGGCTGGCGGACTACCGTCTGCTGCTGCCCGAGCGCCTGCCCGCCGGAGACGGCGCGCTGGCGCTCGG GCAGGCCATCATCGCCGCTCACTGCCTAAAAGATGCGATAGATCCCGCGCAGGCGTCATGCAGCGCCGAGGAATCGGTGA ACTGA
Upstream 100 bases:
>100_bases GCCGCTAGGCTTATCCCCGATCAACCAGCGCAGCGCTGCTATCCCCGGACAACCCAGATATCAAAGCCAGCCCCGCAACG CGCTGGCACGGAGTTATTTT
Downstream 100 bases:
>100_bases TGACGGTAATCAAGGTTCAGCCCTCCGCTTTCCCCGAGGATAAGCCCGGTACAACGAAAGAAGAATCACCATGCATGAAT TATCCCTTTGCCAAAGCGCA
Product: [NiFe] hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 774; Mature: 774
Protein sequence:
>774_residues MEHNAIALRIKGKVQGVGFRPYVWQIAQTLGLHGEVSNDAGGVWLVVRLPADLDTLIQRLYADCPPLAHIDTIERHPWAE TPADGFRIVDSRQGAMDTQIVPDAATCPRCLAEMRDPANRRYGYPFINCTHCGPRFTIIRRMPYDRPFTAMADFPLCPAC AREYHDPADRRFHAQPTACALCGPTMWSCGADGADRREGEAAWQAVTRSLDAGHIVAVKGLGGFHLACDAENDAAIARLR ERKRRPGKPLALMLPDLSWLARYCRAAPDAGLQALLSSPAAPIVLVPASDAVPAQVAPGLDEVGVMLPGTPLHHLLMAHI GRPLVMTSGNASGQPPALDNAQALADLAGIADLWLLHNRDIVQRADDSLVRYAPEGSEMLRRARGYVPDTIALPASFSML PDVAAVGGDLKNTFCLLQRGRALLSQHLGDLGEARIQQQFLQTWQLLLQTYQFSPRAIACDRHPGYHSHRLAQQQADVRG LPLIAVQHHHAHLAACMAEHGIAPQDTPLIGLALDGIGYGESGELWGGECLRVDYRGYTRLGGLPAVALPGGDLAARQPW RNLLAQLLCFVPDWPRYPETQRIQAKNWPLLARAIDRELNCPRASSCGRLFDAAAAALDICHEQISFEGEAACRLEAQAW QAWPQETPVTLKIDEQGELAMGDFWRDWLSWQTSVPLRALAFHRAIADGLAALLRYHAEREGCQTLVLSGGVLHNRLLRQ LLLARLADYRLLLPERLPAGDGALALGQAIIAAHCLKDAIDPAQASCSAEESVN
Sequences:
>Translated_774_residues MEHNAIALRIKGKVQGVGFRPYVWQIAQTLGLHGEVSNDAGGVWLVVRLPADLDTLIQRLYADCPPLAHIDTIERHPWAE TPADGFRIVDSRQGAMDTQIVPDAATCPRCLAEMRDPANRRYGYPFINCTHCGPRFTIIRRMPYDRPFTAMADFPLCPAC AREYHDPADRRFHAQPTACALCGPTMWSCGADGADRREGEAAWQAVTRSLDAGHIVAVKGLGGFHLACDAENDAAIARLR ERKRRPGKPLALMLPDLSWLARYCRAAPDAGLQALLSSPAAPIVLVPASDAVPAQVAPGLDEVGVMLPGTPLHHLLMAHI GRPLVMTSGNASGQPPALDNAQALADLAGIADLWLLHNRDIVQRADDSLVRYAPEGSEMLRRARGYVPDTIALPASFSML PDVAAVGGDLKNTFCLLQRGRALLSQHLGDLGEARIQQQFLQTWQLLLQTYQFSPRAIACDRHPGYHSHRLAQQQADVRG LPLIAVQHHHAHLAACMAEHGIAPQDTPLIGLALDGIGYGESGELWGGECLRVDYRGYTRLGGLPAVALPGGDLAARQPW RNLLAQLLCFVPDWPRYPETQRIQAKNWPLLARAIDRELNCPRASSCGRLFDAAAAALDICHEQISFEGEAACRLEAQAW QAWPQETPVTLKIDEQGELAMGDFWRDWLSWQTSVPLRALAFHRAIADGLAALLRYHAEREGCQTLVLSGGVLHNRLLRQ LLLARLADYRLLLPERLPAGDGALALGQAIIAAHCLKDAIDPAQASCSAEESVN >Mature_774_residues MEHNAIALRIKGKVQGVGFRPYVWQIAQTLGLHGEVSNDAGGVWLVVRLPADLDTLIQRLYADCPPLAHIDTIERHPWAE TPADGFRIVDSRQGAMDTQIVPDAATCPRCLAEMRDPANRRYGYPFINCTHCGPRFTIIRRMPYDRPFTAMADFPLCPAC AREYHDPADRRFHAQPTACALCGPTMWSCGADGADRREGEAAWQAVTRSLDAGHIVAVKGLGGFHLACDAENDAAIARLR ERKRRPGKPLALMLPDLSWLARYCRAAPDAGLQALLSSPAAPIVLVPASDAVPAQVAPGLDEVGVMLPGTPLHHLLMAHI GRPLVMTSGNASGQPPALDNAQALADLAGIADLWLLHNRDIVQRADDSLVRYAPEGSEMLRRARGYVPDTIALPASFSML PDVAAVGGDLKNTFCLLQRGRALLSQHLGDLGEARIQQQFLQTWQLLLQTYQFSPRAIACDRHPGYHSHRLAQQQADVRG LPLIAVQHHHAHLAACMAEHGIAPQDTPLIGLALDGIGYGESGELWGGECLRVDYRGYTRLGGLPAVALPGGDLAARQPW RNLLAQLLCFVPDWPRYPETQRIQAKNWPLLARAIDRELNCPRASSCGRLFDAAAAALDICHEQISFEGEAACRLEAQAW QAWPQETPVTLKIDEQGELAMGDFWRDWLSWQTSVPLRALAFHRAIADGLAALLRYHAEREGCQTLVLSGGVLHNRLLRQ LLLARLADYRLLLPERLPAGDGALALGQAIIAAHCLKDAIDPAQASCSAEESVN
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=756, Percent_Identity=58.8624338624339, Blast_Score=765, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 84517; Mature: 84517
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHNAIALRIKGKVQGVGFRPYVWQIAQTLGLHGEVSNDAGGVWLVVRLPADLDTLIQRL CCCCEEEEEEECEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHH YADCPPLAHIDTIERHPWAETPADGFRIVDSRQGAMDTQIVPDAATCPRCLAEMRDPANR HHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHC RYGYPFINCTHCGPRFTIIRRMPYDRPFTAMADFPLCPACAREYHDPADRRFHAQPTACA CCCCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCCCHHHHHHCCCCHHCCCCCCCCEEE LCGPTMWSCGADGADRREGEAAWQAVTRSLDAGHIVAVKGLGGFHLACDAENDAAIARLR ECCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCHHHHHHHH ERKRRPGKPLALMLPDLSWLARYCRAAPDAGLQALLSSPAAPIVLVPASDAVPAQVAPGL HHHCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHCCCH DEVGVMLPGTPLHHLLMAHIGRPLVMTSGNASGQPPALDNAQALADLAGIADLWLLHNRD HHCCEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH IVQRADDSLVRYAPEGSEMLRRARGYVPDTIALPASFSMLPDVAAVGGDLKNTFCLLQRG HHHHCCCCCEEECCCHHHHHHHHCCCCCCCEECCCCHHHCCHHHHHCCCHHHHHHHHHHH RALLSQHLGDLGEARIQQQFLQTWQLLLQTYQFSPRAIACDRHPGYHSHRLAQQQADVRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCC LPLIAVQHHHAHLAACMAEHGIAPQDTPLIGLALDGIGYGESGELWGGECLRVDYRGYTR CCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCHH LGGLPAVALPGGDLAARQPWRNLLAQLLCFVPDWPRYPETQRIQAKNWPLLARAIDRELN HCCCCEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHCC CPRASSCGRLFDAAAAALDICHEQISFEGEAACRLEAQAWQAWPQETPVTLKIDEQGELA CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCCCCCEEEEECCCCCCH MGDFWRDWLSWQTSVPLRALAFHRAIADGLAALLRYHAEREGCQTLVLSGGVLHNRLLRQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHH LLLARLADYRLLLPERLPAGDGALALGQAIIAAHCLKDAIDPAQASCSAEESVN HHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHCCC >Mature Secondary Structure MEHNAIALRIKGKVQGVGFRPYVWQIAQTLGLHGEVSNDAGGVWLVVRLPADLDTLIQRL CCCCEEEEEEECEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHH YADCPPLAHIDTIERHPWAETPADGFRIVDSRQGAMDTQIVPDAATCPRCLAEMRDPANR HHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHC RYGYPFINCTHCGPRFTIIRRMPYDRPFTAMADFPLCPACAREYHDPADRRFHAQPTACA CCCCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCCCHHHHHHCCCCHHCCCCCCCCEEE LCGPTMWSCGADGADRREGEAAWQAVTRSLDAGHIVAVKGLGGFHLACDAENDAAIARLR ECCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCHHHHHHHH ERKRRPGKPLALMLPDLSWLARYCRAAPDAGLQALLSSPAAPIVLVPASDAVPAQVAPGL HHHCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHCCCH DEVGVMLPGTPLHHLLMAHIGRPLVMTSGNASGQPPALDNAQALADLAGIADLWLLHNRD HHCCEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH IVQRADDSLVRYAPEGSEMLRRARGYVPDTIALPASFSMLPDVAAVGGDLKNTFCLLQRG HHHHCCCCCEEECCCHHHHHHHHCCCCCCCEECCCCHHHCCHHHHHCCCHHHHHHHHHHH RALLSQHLGDLGEARIQQQFLQTWQLLLQTYQFSPRAIACDRHPGYHSHRLAQQQADVRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCC LPLIAVQHHHAHLAACMAEHGIAPQDTPLIGLALDGIGYGESGELWGGECLRVDYRGYTR CCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCHH LGGLPAVALPGGDLAARQPWRNLLAQLLCFVPDWPRYPETQRIQAKNWPLLARAIDRELN HCCCCEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHCC CPRASSCGRLFDAAAAALDICHEQISFEGEAACRLEAQAWQAWPQETPVTLKIDEQGELA CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCCCCCEEEEECCCCCCH MGDFWRDWLSWQTSVPLRALAFHRAIADGLAALLRYHAEREGCQTLVLSGGVLHNRLLRQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHH LLLARLADYRLLLPERLPAGDGALALGQAIIAAHCLKDAIDPAQASCSAEESVN HHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 8661925; 12206761 [H]