Click here to switch to the map view.

The map label for this gene is yfiO [H]

Identifier: 238921073

GI number: 238921073

Start: 3087732

End: 3088469

Strand: Direct

Name: yfiO [H]

Synonym: NT01EI_3208

Alternate gene names: 238921073

Gene position: 3087732-3088469 (Clockwise)

Preceding gene: 238921067

Following gene: 238921074

Centisome position: 80.99

GC content: 55.96

Gene sequence:

>738_bases
ATGACGCGTATCAAATATCTGGTGGCAGCCACCACGTTGAGCCTGGCGCTGGCTGGTTGTTCCAGCTCCAAAGAGGCGGT
GCCCGACAATCCACCTGCAGAAATCTACGCCACCGCACAGCAAAAACTGCAGGACGGTAACTTTAAAGCGGCGATTACGC
AACTGGAAGCGCTGGATAACCGTTATCCATTTGGCCCTTACTCTCAGCAGGTGCAGCTGGATCTGATCTACGCCTACTAT
AAGTCGGCTGACCTGCCGATGGCACAGGCTACCATCGATCGCTTCATCCGTCTCAATCCGACCAGTCAAAACATGTCCTA
TGTATTGTACATGCGCGGCCTGACAGATATGGCTATGGACGACAGCGCACTGCAGGGATTCTTCGGCATCGACCGCTCTG
ACCGTGACCCCGAATACGCCCGCCAGGCTTTCCGTGACTTCAGCCAGCTGGTACAGCGTTACCCGAACAGCGCTTATACT
ACAGATGCGACCAAGCGTCTGGTCTTCCTGAAAAATCGGCTCGCCAAACACGAATTGGCCGTCGCCCGCTTCTACACCAA
GCGCGGTGCCTATGTCGCCGTGGTGAACCGCGTAGAGCAGATGCTGCGCAACTATCCGGATACCCAAGCGACCCGTGGCG
CTCTGCCGCTGATGGAGAATGCCTACCGCCAGATGGGCCTGAACGGTGAAGCCGACAAGGTACAAAAAATCATCGCGTTC
AACGGCGACAAGACATAG

Upstream 100 bases:

>100_bases
CGGCGTTGCCGTTTAAAATAATGTGCTATTGTAGCTGGTCTTTGCCGGGAGCTTAACGGAGAGTCACCCGGAACAACACA
AAAAGGGTAAGCAAAACGTC

Downstream 100 bases:

>100_bases
CGCCAATCCAGAGATAGATAAACAAAAGGCAGCCATCAGCTGCCTTTTGTTTGATCCGCACAGGCGTAGCCGGGAAGCAC
GTTCCGCCCCTCTGGAAAAA

Product: outer membrane protein assembly complex subunit YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTRIKYLVAATTLSLALAGCSSSKEAVPDNPPAEIYATAQQKLQDGNFKAAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KSADLPMAQATIDRFIRLNPTSQNMSYVLYMRGLTDMAMDDSALQGFFGIDRSDRDPEYARQAFRDFSQLVQRYPNSAYT
TDATKRLVFLKNRLAKHELAVARFYTKRGAYVAVVNRVEQMLRNYPDTQATRGALPLMENAYRQMGLNGEADKVQKIIAF
NGDKT

Sequences:

>Translated_245_residues
MTRIKYLVAATTLSLALAGCSSSKEAVPDNPPAEIYATAQQKLQDGNFKAAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KSADLPMAQATIDRFIRLNPTSQNMSYVLYMRGLTDMAMDDSALQGFFGIDRSDRDPEYARQAFRDFSQLVQRYPNSAYT
TDATKRLVFLKNRLAKHELAVARFYTKRGAYVAVVNRVEQMLRNYPDTQATRGALPLMENAYRQMGLNGEADKVQKIIAF
NGDKT
>Mature_244_residues
TRIKYLVAATTLSLALAGCSSSKEAVPDNPPAEIYATAQQKLQDGNFKAAITQLEALDNRYPFGPYSQQVQLDLIYAYYK
SADLPMAQATIDRFIRLNPTSQNMSYVLYMRGLTDMAMDDSALQGFFGIDRSDRDPEYARQAFRDFSQLVQRYPNSAYTT
DATKRLVFLKNRLAKHELAVARFYTKRGAYVAVVNRVEQMLRNYPDTQATRGALPLMENAYRQMGLNGEADKVQKIIAFN
GDKT

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=245, Percent_Identity=80, Blast_Score=408, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27680; Mature: 27549

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIKYLVAATTLSLALAGCSSSKEAVPDNPPAEIYATAQQKLQDGNFKAAITQLEALDN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
RYPFGPYSQQVQLDLIYAYYKSADLPMAQATIDRFIRLNPTSQNMSYVLYMRGLTDMAMD
CCCCCCCCCCEEHHHHEEHHHCCCCCHHHHHHHHHEECCCCCCCCEEEEEECCCHHHHCC
DSALQGFFGIDRSDRDPEYARQAFRDFSQLVQRYPNSAYTTDATKRLVFLKNRLAKHELA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VARFYTKRGAYVAVVNRVEQMLRNYPDTQATRGALPLMENAYRQMGLNGEADKVQKIIAF
HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
NGDKT
CCCCC
>Mature Secondary Structure 
TRIKYLVAATTLSLALAGCSSSKEAVPDNPPAEIYATAQQKLQDGNFKAAITQLEALDN
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
RYPFGPYSQQVQLDLIYAYYKSADLPMAQATIDRFIRLNPTSQNMSYVLYMRGLTDMAMD
CCCCCCCCCCEEHHHHEEHHHCCCCCHHHHHHHHHEECCCCCCCCEEEEEECCCHHHHCC
DSALQGFFGIDRSDRDPEYARQAFRDFSQLVQRYPNSAYTTDATKRLVFLKNRLAKHELA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VARFYTKRGAYVAVVNRVEQMLRNYPDTQATRGALPLMENAYRQMGLNGEADKVQKIIAF
HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
NGDKT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]