| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921067
Identifier: 238921067
GI number: 238921067
Start: 3075032
End: 3076288
Strand: Direct
Name: 238921067
Synonym: NT01EI_3198
Alternate gene names: NA
Gene position: 3075032-3076288 (Clockwise)
Preceding gene: 238921066
Following gene: 238921073
Centisome position: 80.66
GC content: 54.02
Gene sequence:
>1257_bases TTGCCTGATTTTGATATGTTCAATCCAACATCAAAAGCAGGTTACTTTATGAACGAAAAACAGTTGCAGGCTCTGGCTAA CGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGCCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGG CTCTCAACGCCGAAATGTCCCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTAT TCCACAAAGACCGTTACCACCGGTGATGGCCCTCTGGAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCA ACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGTTGTACGCCAAAGGGATGACCACCC GCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGCCGTA ATGGAGCAGGTTACCGAATGGCAAAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAA GGTCCGGCAGGACAGTCGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGC TGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGTTCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAAC GATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATACGGTGTATCCGGAAGCCCGCATCCA GCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAAGCCGTCACCCGCGACCTGA AAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCAGGCGCTGGAAGCGTTCGCCAGCGCATGGGACAACCGCTAC CCGCAGATAAGCCGTAGCTGGCAGACAAACTGGGCTAACCTGGCGACGTTCTTCGCTTACCCGGCAGACATCCGCAAGGT GATCTACACAACGAATGCTATCGAGTCGCTGAACAGCGTGATCCGGCATGCCATCAAAAAGCGTAAGGTGTTCCCGACGG ACGAAGCAGTGAAAAAGGTGGTGTGGTTAGCGATCCAGGCGGCATCACAGAAATGGACCATGCCGCTGAGGGACTGGCGT ATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGATCGTCTGGACGGTCACTTCTGA
Upstream 100 bases:
>100_bases AGCCGGGGGACTTGCTGACGTTGTATGTGAAAGATAAGCAAGACGGCAATAGTTGACGTTTTCCTGCACAAAAAAAGAGC CTGTACATAAATTTGTGTAA
Downstream 100 bases:
>100_bases GAAAAGGCATTTACACAGAATCGTGTACAGGGTCCAAAAAAAAGCGCCCTCGCGGCGCTTTTTTTATTGGCTCACAGAGC CCGCGGCTATTCCGGGCGGA
Product: transposase, Mutator family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQQALEAFASAWDNRY PQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWR MAMSRFIIEFGDRLDGHF
Sequences:
>Translated_418_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQQALEAFASAWDNRY PQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWR MAMSRFIIEFGDRLDGHF >Mature_417_residues PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGYS TKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVM EQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLND ILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQQALEAFASAWDNRYP QISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRM AMSRFIIEFGDRLDGHF
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 47480; Mature: 47349
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAP HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC TEDAGQQALEAFASAWDNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSV CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDGHF HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAP HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC TEDAGQQALEAFASAWDNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSV CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDGHF HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]