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The map label for this gene is rlpA [H]

Identifier: 238920818

GI number: 238920818

Start: 2832625

End: 2833737

Strand: Direct

Name: rlpA [H]

Synonym: NT01EI_2944

Alternate gene names: 238920818

Gene position: 2832625-2833737 (Clockwise)

Preceding gene: 238920817

Following gene: 238920819

Centisome position: 74.3

GC content: 68.1

Gene sequence:

>1113_bases
ATGGCGCACAAATCCTGGCTCAGCCTGAGCCTGGCCTGTCTGATCCTGGCAGGCTGTTCCACCAACGACAACGGTGGGAC
CCAGGCACCACCGCAGCCGGCCTACAGCGGCCCGGTCGAAGAGATCCCCGGCGTCGAACCGCGCTATGAACCCTATATTC
CCAGCGCCAATCAGGATTACCGCCGTAACGGCCAGCGCTATACCATCGTCAAGGATCCATCCAACTTCTCCCAGATAGGC
CTGGCGGCCAGCTACGGCGAAGAAAACCGCGGCAACGTCACCGCCAGCGGTGAACAGTTCAACCCGGAGGCGATGAGCGC
CGCCCACCCGACGCTGCCGATCCCCAGCTACGTGCGGGTAACCAACCTGGCCAACGGGCGCCGCATCGTGGTGCGCATTA
ACGACCGCGGCCCCTATACCCCGGGCCGCATCATCGCTCTCTCCAGCGCCGCCGCCAACCGCCTCAATATTACCCAGCAC
ACCAAGGTGCGCGTCGACTTTATCAGCGTCGCGCCTGACGGCAGCCTCTCCGGGCCGGGCACCATCGGTACCCGGGTCGC
CAAACAGAGCTATGCCCTGCCCGCCCGCCCGGAGATCGGCATGGAGAGTCCGCAGCTCACCGTCAGCCCCTCCGTCGCGG
CTGGCCAGCCGACAGTCCGCGCCATCGAAAATCCGACGCCGGCAAGCCTGGCAGCAGAGACTGCGCCAGGGCAGAGCATG
CCGATCAGCGCCCCCGCCAGCCACAGCGGCCGCTTCCTCGGCGCGCCTCAGCCGTTGCGCAGCGGCGTGCTGGAAGAGAG
CGCCCCGGCTGCACCGCCGATGGCAACCCCGGGCGCCGCCAGCGCAGTGGCAGCACCGCCTACTGCCGCCAGCCACGCCG
CTGCCAGCGGCCACTATCTGGTGCAGGTCGGTGCCGTCAGCAGCAGTTCACGCGCAGCCCAGTGGCAGCAGCAGCTGAGC
CAGCGCTTCGGCGTCCCCGGCAAAGTAGAGGCAAACGGTGCCATCTACCGTGTCCAGCTGGGGCCGTTTGCCAGCCGCGC
GCAGGCCAGCGCGCTGCAGCAGCGGCTGAGCAGCGAGGCCGGGCAACAGTCATTCATTGCCACGGCGCCCTGA

Upstream 100 bases:

>100_bases
GCTCGGCGCTGATCGTACTGATGGCCGGGTTTGGCATCGTGATGTCGATCCATACCCATCGCAAAATGTTATCCAAGAAT
CTATAGAGGTCGCGATGAGA

Downstream 100 bases:

>100_bases
GCCTACTGACGCTGGCCCGCCCGTCGCGGGCCATGCAACACTTATACACATATTGATTGTGTAAAAAACCATTGCCACGC
TATGCCTTAGCGTACCATCT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MAHKSWLSLSLACLILAGCSTNDNGGTQAPPQPAYSGPVEEIPGVEPRYEPYIPSANQDYRRNGQRYTIVKDPSNFSQIG
LAASYGEENRGNVTASGEQFNPEAMSAAHPTLPIPSYVRVTNLANGRRIVVRINDRGPYTPGRIIALSSAAANRLNITQH
TKVRVDFISVAPDGSLSGPGTIGTRVAKQSYALPARPEIGMESPQLTVSPSVAAGQPTVRAIENPTPASLAAETAPGQSM
PISAPASHSGRFLGAPQPLRSGVLEESAPAAPPMATPGAASAVAAPPTAASHAAASGHYLVQVGAVSSSSRAAQWQQQLS
QRFGVPGKVEANGAIYRVQLGPFASRAQASALQQRLSSEAGQQSFIATAP

Sequences:

>Translated_370_residues
MAHKSWLSLSLACLILAGCSTNDNGGTQAPPQPAYSGPVEEIPGVEPRYEPYIPSANQDYRRNGQRYTIVKDPSNFSQIG
LAASYGEENRGNVTASGEQFNPEAMSAAHPTLPIPSYVRVTNLANGRRIVVRINDRGPYTPGRIIALSSAAANRLNITQH
TKVRVDFISVAPDGSLSGPGTIGTRVAKQSYALPARPEIGMESPQLTVSPSVAAGQPTVRAIENPTPASLAAETAPGQSM
PISAPASHSGRFLGAPQPLRSGVLEESAPAAPPMATPGAASAVAAPPTAASHAAASGHYLVQVGAVSSSSRAAQWQQQLS
QRFGVPGKVEANGAIYRVQLGPFASRAQASALQQRLSSEAGQQSFIATAP
>Mature_369_residues
AHKSWLSLSLACLILAGCSTNDNGGTQAPPQPAYSGPVEEIPGVEPRYEPYIPSANQDYRRNGQRYTIVKDPSNFSQIGL
AASYGEENRGNVTASGEQFNPEAMSAAHPTLPIPSYVRVTNLANGRRIVVRINDRGPYTPGRIIALSSAAANRLNITQHT
KVRVDFISVAPDGSLSGPGTIGTRVAKQSYALPARPEIGMESPQLTVSPSVAAGQPTVRAIENPTPASLAAETAPGQSMP
ISAPASHSGRFLGAPQPLRSGVLEESAPAAPPMATPGAASAVAAPPTAASHAAASGHYLVQVGAVSSSSRAAQWQQQLSQ
RFGVPGKVEANGAIYRVQLGPFASRAQASALQQRLSSEAGQQSFIATAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=376, Percent_Identity=53.7234042553192, Blast_Score=331, Evalue=6e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 38384; Mature: 38253

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHKSWLSLSLACLILAGCSTNDNGGTQAPPQPAYSGPVEEIPGVEPRYEPYIPSANQDY
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
RRNGQRYTIVKDPSNFSQIGLAASYGEENRGNVTASGEQFNPEAMSAAHPTLPIPSYVRV
HHCCCEEEEEECCCCCHHHCEEEECCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCEEEE
TNLANGRRIVVRINDRGPYTPGRIIALSSAAANRLNITQHTKVRVDFISVAPDGSLSGPG
EECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCC
TIGTRVAKQSYALPARPEIGMESPQLTVSPSVAAGQPTVRAIENPTPASLAAETAPGQSM
CHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCHHHEECCCCCCCC
PISAPASHSGRFLGAPQPLRSGVLEESAPAAPPMATPGAASAVAAPPTAASHAAASGHYL
CCCCCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEE
VQVGAVSSSSRAAQWQQQLSQRFGVPGKVEANGAIYRVQLGPFASRAQASALQQRLSSEA
EEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHC
GQQSFIATAP
CCCCEEEECC
>Mature Secondary Structure 
AHKSWLSLSLACLILAGCSTNDNGGTQAPPQPAYSGPVEEIPGVEPRYEPYIPSANQDY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
RRNGQRYTIVKDPSNFSQIGLAASYGEENRGNVTASGEQFNPEAMSAAHPTLPIPSYVRV
HHCCCEEEEEECCCCCHHHCEEEECCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCEEEE
TNLANGRRIVVRINDRGPYTPGRIIALSSAAANRLNITQHTKVRVDFISVAPDGSLSGPG
EECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCC
TIGTRVAKQSYALPARPEIGMESPQLTVSPSVAAGQPTVRAIENPTPASLAAETAPGQSM
CHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCHHHEECCCCCCCC
PISAPASHSGRFLGAPQPLRSGVLEESAPAAPPMATPGAASAVAAPPTAASHAAASGHYL
CCCCCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEE
VQVGAVSSSSRAAQWQQQLSQRFGVPGKVEANGAIYRVQLGPFASRAQASALQQRLSSEA
EEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHC
GQQSFIATAP
CCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]