| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is gltJ [H]
Identifier: 238920804
GI number: 238920804
Start: 2819885
End: 2820625
Strand: Direct
Name: gltJ [H]
Synonym: NT01EI_2930
Alternate gene names: 238920804
Gene position: 2819885-2820625 (Clockwise)
Preceding gene: 238920803
Following gene: 238920805
Centisome position: 73.97
GC content: 58.97
Gene sequence:
>741_bases ATGTCTATCGATTGGAACTGGGGCATCTTTCTGCAACCGGCCCCTTTTGGCGGCACCACTTACCTGGGCTGGATCTGGTC CGGCATGCAGGTCACCATCGCCCTGTCGCTCGCTGCCTGGGTTATCGCCTTTGTACTCGGCTCCCTGCTGGGCATATTGC GGACCCTGCCCAGCCGTCCGCTGGCCATGATTGGCGCGATCTATGTCGAGCTGTTCCGCAATGTTCCGCTGATCGTGCAG TTTTTTACCTGGTATCTGGTGGTGCCGGAGCTGCTGCCGACCGACTGGGGCAACTGGTTTAAAGGGGAGCTTGACCCGTC CATCCAATTTTTTGTCTCCTCGCTGCTCTGTCTCGGTCTGTTTACCGCCGCCCGGATCTGCGAACAGGTACGCGCCGCCA TTCAGTCTCTGCCGGCCGGACAGCGGAGCGCCGGGCTGGCCATGGGCTTCACCCTGCCACAGACCTACCGCTATGTTCTG CTGCCCAACGCCTATCGGGTCATTGTGCCGCCGCTGACCTCTGAAATGCTCAATCTGGTGAAGAACTCCGCCATCGCCTC CACCATTGGCCTGATGGATATGGCCGCACAGGCCGGCAAGTTGCTGGACTATTCGGCACACGCCTATGAATCGTTTACCG CTATCACGCTGGCCTACATCGCCATCAATGCCCTGCTAATGCTGGGCATGCATCTGCTGGAACGGCATCTGCAATTGCCT GGCAGTATGAGGAGCCATTAA
Upstream 100 bases:
>100_bases AGCCCGGCCTCAGGCCATCGCGCGGACCCCCCGTCCGCGCGATGGCGCGCGCATCTGCGGCGCCCCCGAGCGACGGGGGG CCGGCTAACCGGAGTCACCT
Downstream 100 bases:
>100_bases TGTACGCATTTGACTGGAGTTCCATTGTCCCCAGCCTGCCCTACCTGCTGGATGGGTTGGTTATCACGCTGAAGATAACG CTGACAGCGGTGGTAGTCGG
Product: polar amino acid ABC transporter, inner membrane subunit
Products: ADP; phosphate; L-glutamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSIDWNWGIFLQPAPFGGTTYLGWIWSGMQVTIALSLAAWVIAFVLGSLLGILRTLPSRPLAMIGAIYVELFRNVPLIVQ FFTWYLVVPELLPTDWGNWFKGELDPSIQFFVSSLLCLGLFTAARICEQVRAAIQSLPAGQRSAGLAMGFTLPQTYRYVL LPNAYRVIVPPLTSEMLNLVKNSAIASTIGLMDMAAQAGKLLDYSAHAYESFTAITLAYIAINALLMLGMHLLERHLQLP GSMRSH
Sequences:
>Translated_246_residues MSIDWNWGIFLQPAPFGGTTYLGWIWSGMQVTIALSLAAWVIAFVLGSLLGILRTLPSRPLAMIGAIYVELFRNVPLIVQ FFTWYLVVPELLPTDWGNWFKGELDPSIQFFVSSLLCLGLFTAARICEQVRAAIQSLPAGQRSAGLAMGFTLPQTYRYVL LPNAYRVIVPPLTSEMLNLVKNSAIASTIGLMDMAAQAGKLLDYSAHAYESFTAITLAYIAINALLMLGMHLLERHLQLP GSMRSH >Mature_245_residues SIDWNWGIFLQPAPFGGTTYLGWIWSGMQVTIALSLAAWVIAFVLGSLLGILRTLPSRPLAMIGAIYVELFRNVPLIVQF FTWYLVVPELLPTDWGNWFKGELDPSIQFFVSSLLCLGLFTAARICEQVRAAIQSLPAGQRSAGLAMGFTLPQTYRYVLL PNAYRVIVPPLTSEMLNLVKNSAIASTIGLMDMAAQAGKLLDYSAHAYESFTAITLAYIAINALLMLGMHLLERHLQLPG SMRSH
Specific function: Part of the binding-protein-dependent transport system for aspartate/glutamate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786874, Length=243, Percent_Identity=79.8353909465021, Blast_Score=405, Evalue=1e-114, Organism=Escherichia coli, GI1788226, Length=198, Percent_Identity=32.8282828282828, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=27.906976744186, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=40, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=26.2910798122066, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=28.7735849056604, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=27.9816513761468, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI87082239, Length=169, Percent_Identity=26.6272189349112, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787087, Length=220, Percent_Identity=24.5454545454545, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788646, Length=181, Percent_Identity=28.7292817679558, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 27183; Mature: 27051
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDWNWGIFLQPAPFGGTTYLGWIWSGMQVTIALSLAAWVIAFVLGSLLGILRTLPSRP CCCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LAMIGAIYVELFRNVPLIVQFFTWYLVVPELLPTDWGNWFKGELDPSIQFFVSSLLCLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH FTAARICEQVRAAIQSLPAGQRSAGLAMGFTLPQTYRYVLLPNAYRVIVPPLTSEMLNLV HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHEEEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLMDMAAQAGKLLDYSAHAYESFTAITLAYIAINALLMLGMHLLERHLQLP HHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSMRSH CCCCCC >Mature Secondary Structure SIDWNWGIFLQPAPFGGTTYLGWIWSGMQVTIALSLAAWVIAFVLGSLLGILRTLPSRP CCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LAMIGAIYVELFRNVPLIVQFFTWYLVVPELLPTDWGNWFKGELDPSIQFFVSSLLCLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH FTAARICEQVRAAIQSLPAGQRSAGLAMGFTLPQTYRYVLLPNAYRVIVPPLTSEMLNLV HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHEEEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLMDMAAQAGKLLDYSAHAYESFTAITLAYIAINALLMLGMHLLERHLQLP HHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSMRSH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamate [Periplasm] + H2O = ADP + phosphate + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]