| Definition | Eubacterium eligens ATCC 27750 chromosome, complete genome. |
|---|---|
| Accession | NC_012778 |
| Length | 2,144,190 |
Click here to switch to the map view.
The map label for this gene is pcrA [H]
Identifier: 238917480
GI number: 238917480
Start: 1608008
End: 1610476
Strand: Reverse
Name: pcrA [H]
Synonym: EUBELI_01558
Alternate gene names: 238917480
Gene position: 1610476-1608008 (Counterclockwise)
Preceding gene: 238917481
Following gene: 238917479
Centisome position: 75.11
GC content: 40.3
Gene sequence:
>2469_bases ATGAGATTAGAAGATTTGAATGACAGCCAGAAAAGGGCAGTTAAATATACAGATGGTGCGCTGCTTATTATTGCCGGAGC AGGCTCTGGAAAGACACGCGTGCTTACGAACAGAATTGCATATTTAATAGAAGAATGCGGAGTAGACCCATATAATATTA TGGCAATTACATTTACTAATAAAGCTGCAAGAGAGATGAAAGAACGAGTTGAGACTACTGTGGCACAGGGTGCAGGGGCT GTATGGGTAAGTACATTCCACTCAACATGCGTGAGAATTTTAAGAAGATACATAGACAGAATTGGATACGATAATAACTT TACGATATATGATACGGACGACCAGAAGTCTGTAATCAAGGATATATGTAAGAAGATGAATATAGATACGAAGATGCTTA AAGAGCGTGCAATTATGAGTAAGATTTCATCTGCTAAAGATGAGTTAAAGACTCCTGATGAGTTCGAGCTTGAGGCAGGT AACGACTATAATCTTAGAAGAATTGCGGGCGTATACAGAGAATATCAGAAGACGCTTAAGCTTAACAATGCACTTGATTT TGATGACCTGATATTCAAGACGGTTGAGCTGTTTCAGAGTGATGCAGAGGTACTTGAGCATTATCAGGACAGATTCAGAT ATATAATGGTCGATGAGTATCAGGATACTAATACATCACAGTTTAAGCTTGTTGCAATGCTTGCAGCAAAGTATGGCAAT ATATGTGTGGTTGGTGATGATGACCAGTCTATATATAAGTTCCGTGGAGCAAACATTTATAATATTCTTAACTTTGAAAA TGTGTTCACAGGCGCTAAGGTTATAAAGCTTGAGCAGAATTACCGTTCGACGCAGACTATTCTTAATGCTGCAAATGCGG TGATAAGTAATAATATTGGCAGAAAGAGCAAGTCACTCTGGACTGATAACGGAGAGGGCGAGAAGGTCAATTATACTCTG TATGAGAACGGGTATGATGAAGCAGAAGGCGTTGCGAGTGGTATTGCAGAGTATGTAAGGGATGGCTGGAATTATAATGA TGTTGCCATTCTTTACAGAACTAATGCACAGTCAAGAGCGCTCGAAGAAAAGCTGATGATTCACAACATTCCATATAAGA TATATGGCGGACAGAATTTCTATCAGCGAAAGGAAATCAAAGATATTCTTGCTTATCTTAAAACTATTGATAATGGTCTT GATGGTCAGGCGGTTAAGCGAATTATAAATGTTCCGAAGAGGGGGATTGGTAATACTACGATTGACAGATTGCAGGAATA TGCAGATTTTAATGATATTACTTTCTGGGAAGCACTTGTCAATGCAAAGGATATTGACACAATAAAGAATGCGGCACTTT CCAAGTTAGAGCCATTTGTTGACCTTATTGGAAGACTGCGTGCCAAAGAAGAATTTATGTCATTAAAGGAGCTTGCTGAG GCTGTAATTGAGGATACAGGATATATTGAGAGCCTTTCACAGAATGAAACGGTGGAAGAGGTTGAGGCAAGACGCGAGAA TCTGGATGAATTCATTAATAAGGTTGTAAGCTATGAGGAGAGCTGTAAAGAAGCAGGCGAAGAGCCTACACTTTCAGGAC TTCTTGAAGAAGTTGCCTTAATAGCGGATATTGATAATCTTGATGAGTCAGAGCCTCATGTAATGCTTATGACGCTGCAC AGTGCGAAAGGTCTGGAATTTCCAATCGTGTATATGACAGGAATGGAGGACGGACTTTTCCCAAGCTATATGACAATTGT GTCAGATGATTCAACTGAGATAGAGGAAGAGAGAAGACTGTGCTATGTTGGAATAACAAGAGCAGAGAAAATACTTAATC TTACAAGTGCCAAGTCGCGTATGGTGCGTGGTGAAACACAGATGAATAAGGTTTCAAGATTTATTAATGAAATTCCTAAG GATTATATGCACATAGAAAACAATTCCAGTGGGTATGCTAAAGGCAGGATTGCATATGGCGGGACATCAGATGAGCCGGA TACAACAGGCATTAACATGCGCGCAACAGCCAGATCAATTCTTAGCAGCTACGGAAGTGGCACACCAGGCGGAAGGGCAG CAGGAACATATAGTTCAAGAAAGGTTAAGATAAATGGCAGTTCTAATCCGGGATTTGGAAAAGACCCTATGGAATTATTT GACCTTAAGAAACCAGAAAAGAGAAAGACACCGGCAGATTCTGTAAGAAGTGCTTATGCAGGAGTGCCTACACGAAGCGG CTTGTCTTCAAGAAATGTAATAGGTGCTGCAAGAGGTGCAGATATAAGTGCAAAATCTTCAGGTGGACTTGGCTACAGTG TCGGTGATATGGTGAGCCATGTGAAATTCGGCGAAGGAAAGGTACTTGCTATAGAGGATTCAGCAAGAGACTATATGGTA ACAGTTGAATTTGCAGAGTACGGACAGAAGAAAATGCTGGCAGGATTTGCCAGACTTAAAAAACTATAA
Upstream 100 bases:
>100_bases TTGTCATATTGGCTTGGCAACATCCCGTTGTTTTTGTATAATGTGGTAGTTGGCAGAAATAAGGTGGATATAGATTTCAC ATTTGCATGAAGGTGGATAT
Downstream 100 bases:
>100_bases TGACAAATGTTTAACGCTATGCTATAATACATTTATTAAATCCGTGGTATGAAAGGAGATATTGTTATGAGTAAAGAAAA ATTAGATGAGCTTATCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNKAAREMKERVETTVAQGAGA VWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIKDICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAG NDYNLRRIAGVYREYQKTLKLNNALDFDDLIFKTVELFQSDAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGN ICVVGDDDQSIYKFRGANIYNILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIGRKSKSLWTDNGEGEKVNYTL YENGYDEAEGVASGIAEYVRDGWNYNDVAILYRTNAQSRALEEKLMIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGL DGQAVKRIINVPKRGIGNTTIDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKEEFMSLKELAE AVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPTLSGLLEEVALIADIDNLDESEPHVMLMTLH SAKGLEFPIVYMTGMEDGLFPSYMTIVSDDSTEIEEERRLCYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEIPK DYMHIENNSSGYAKGRIAYGGTSDEPDTTGINMRATARSILSSYGSGTPGGRAAGTYSSRKVKINGSSNPGFGKDPMELF DLKKPEKRKTPADSVRSAYAGVPTRSGLSSRNVIGAARGADISAKSSGGLGYSVGDMVSHVKFGEGKVLAIEDSARDYMV TVEFAEYGQKKMLAGFARLKKL
Sequences:
>Translated_822_residues MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNKAAREMKERVETTVAQGAGA VWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIKDICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAG NDYNLRRIAGVYREYQKTLKLNNALDFDDLIFKTVELFQSDAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGN ICVVGDDDQSIYKFRGANIYNILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIGRKSKSLWTDNGEGEKVNYTL YENGYDEAEGVASGIAEYVRDGWNYNDVAILYRTNAQSRALEEKLMIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGL DGQAVKRIINVPKRGIGNTTIDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKEEFMSLKELAE AVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPTLSGLLEEVALIADIDNLDESEPHVMLMTLH SAKGLEFPIVYMTGMEDGLFPSYMTIVSDDSTEIEEERRLCYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEIPK DYMHIENNSSGYAKGRIAYGGTSDEPDTTGINMRATARSILSSYGSGTPGGRAAGTYSSRKVKINGSSNPGFGKDPMELF DLKKPEKRKTPADSVRSAYAGVPTRSGLSSRNVIGAARGADISAKSSGGLGYSVGDMVSHVKFGEGKVLAIEDSARDYMV TVEFAEYGQKKMLAGFARLKKL >Mature_822_residues MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNKAAREMKERVETTVAQGAGA VWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIKDICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAG NDYNLRRIAGVYREYQKTLKLNNALDFDDLIFKTVELFQSDAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGN ICVVGDDDQSIYKFRGANIYNILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIGRKSKSLWTDNGEGEKVNYTL YENGYDEAEGVASGIAEYVRDGWNYNDVAILYRTNAQSRALEEKLMIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGL DGQAVKRIINVPKRGIGNTTIDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKEEFMSLKELAE AVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPTLSGLLEEVALIADIDNLDESEPHVMLMTLH SAKGLEFPIVYMTGMEDGLFPSYMTIVSDDSTEIEEERRLCYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEIPK DYMHIENNSSGYAKGRIAYGGTSDEPDTTGINMRATARSILSSYGSGTPGGRAAGTYSSRKVKINGSSNPGFGKDPMELF DLKKPEKRKTPADSVRSAYAGVPTRSGLSSRNVIGAARGADISAKSSGGLGYSVGDMVSHVKFGEGKVLAIEDSARDYMV TVEFAEYGQKKMLAGFARLKKL
Specific function: Essential helicase. May act as a helicase in plasmid pT181 replication [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=639, Percent_Identity=41.9405320813771, Blast_Score=496, Evalue=1e-141, Organism=Escherichia coli, GI48994965, Length=644, Percent_Identity=41.304347826087, Blast_Score=431, Evalue=1e-122, Organism=Escherichia coli, GI1787196, Length=338, Percent_Identity=26.0355029585799, Blast_Score=103, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6322369, Length=738, Percent_Identity=29.1327913279133, Blast_Score=228, Evalue=3e-60, Organism=Saccharomyces cerevisiae, GI6324477, Length=657, Percent_Identity=24.6575342465753, Blast_Score=114, Evalue=8e-26,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92124; Mature: 92124
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTN CCCCCCCCCHHHEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECC KAAREMKERVETTVAQGAGAVWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH DICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAGNDYNLRRIAGVYREYQKTLK HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH LNNALDFDDLIFKTVELFQSDAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCC ICVVGDDDQSIYKFRGANIYNILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIG EEEECCCCCHHHHCCCCCEEEEECHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC RKSKSLWTDNGEGEKVNYTLYENGYDEAEGVASGIAEYVRDGWNYNDVAILYRTNAQSRA CCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH LEEKLMIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGLDGQAVKRIINVPKRGIGNTT HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHH IDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKEEFMSLKELAE HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPTLSGLLEEVAL HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IADIDNLDESEPHVMLMTLHSAKGLEFPIVYMTGMEDGLFPSYMTIVSDDSTEIEEERRL HHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCE CYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEIPKDYMHIENNSSGYAKGRIAYG EEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCEEEEC GTSDEPDTTGINMRATARSILSSYGSGTPGGRAAGTYSSRKVKINGSSNPGFGKDPMELF CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHH DLKKPEKRKTPADSVRSAYAGVPTRSGLSSRNVIGAARGADISAKSSGGLGYSVGDMVSH CCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH VKFGEGKVLAIEDSARDYMVTVEFAEYGQKKMLAGFARLKKL HCCCCCCEEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTN CCCCCCCCCHHHEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECC KAAREMKERVETTVAQGAGAVWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH DICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAGNDYNLRRIAGVYREYQKTLK HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH LNNALDFDDLIFKTVELFQSDAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCC ICVVGDDDQSIYKFRGANIYNILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIG EEEECCCCCHHHHCCCCCEEEEECHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC RKSKSLWTDNGEGEKVNYTLYENGYDEAEGVASGIAEYVRDGWNYNDVAILYRTNAQSRA CCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH LEEKLMIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGLDGQAVKRIINVPKRGIGNTT HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHH IDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKEEFMSLKELAE HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPTLSGLLEEVAL HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IADIDNLDESEPHVMLMTLHSAKGLEFPIVYMTGMEDGLFPSYMTIVSDDSTEIEEERRL HHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCE CYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEIPKDYMHIENNSSGYAKGRIAYG EEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCEEEEC GTSDEPDTTGINMRATARSILSSYGSGTPGGRAAGTYSSRKVKINGSSNPGFGKDPMELF CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHH DLKKPEKRKTPADSVRSAYAGVPTRSGLSSRNVIGAARGADISAKSSGGLGYSVGDMVSH CCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH VKFGEGKVLAIEDSARDYMVTVEFAEYGQKKMLAGFARLKKL HCCCCCCEEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8232203 [H]