Click here to switch to the map view.

The map label for this gene is ydcR [C]

Identifier: 238896509

GI number: 238896509

Start: 4488203

End: 4489384

Strand: Reverse

Name: ydcR [C]

Synonym: KP1_4690

Alternate gene names: 238896509

Gene position: 4489384-4488203 (Counterclockwise)

Preceding gene: 238896510

Following gene: 238896505

Centisome position: 85.54

GC content: 59.56

Gene sequence:

>1182_bases
ATGCACGATCGGCGTCTCGCCGCCCGCGCGGGTGAACTCAAGCCCTCCGCCGTCCGCGAACTTCTCAAGCACAGTAAACT
GCCCGGCGTGATTTCGCTTGGCGGCGGCATTCCGGCCCCGGAACTGTTTGATACCGAAGGCCTGGAGCTGGCGGTGCAGA
AGGTGATGAGCGAGCGTTTTAATGACGCATTCCAGTACGGTCTGACGGAAGGCTACCCGCCGCTGCGCCAGGCGGTGAGT
GAAATTTGCCACTCCCGTGGCGTCGCCTGTTCAGCCGCCCAGGTCTATATCACCTCCGGCTCCCAGCAATCGCTGGATAT
CGTTGCCCGTACGCTGCTCGATCCGGGCGATACTATCGTCGTTGAGCGTCCCACTTATCTGGCGGCGCTGCAGGTATTTC
AGCTGGCGCAGGCCAATATTCTCAGCGTTGACACCGACGATGACGGGATGCTGGTGGAGCAGTTGGCCGACCTGCTGGAG
ACCACCCGCGTCAAAGCTGTTTACCTGGTGCCGACGTTCGGCAATCCCGGCGGCAAAACGCTGAGCGAGGCGCGTCGTCG
CCGGTTGGTTGAGCTGGCGAAAAAATATGATTTCGTCATTCTGGAAGACGATCCCTACGGCGAAATTAGCTTTACTGACG
CCGTTCGGCGCCCGCTCTATCAGCATGCTGTCGAGCTGGGCTGTGAAGATCAGGTGGTTTACACCTCGACTTTTTCGAAA
ATCCTCGCGCCAGGGATGCGTATCGGCTGGATCGTCATGCCGGACTGGCTGGCGCAGCAGACGGTGATTGTGAAGCAGGC
GGCGGATCTGCATACCAATATGCTGTCGCAGGTGATCACTGCGGAATACCTCAGTCTGAACCGGCTGGATAACCAGATTG
CGTTGATTCGCGAAGACTACCGCAAGAAGTGCGTGGCGCTGGCCGATGCGCTGGAAAGCCGCCTTGGCGAGCACCTGGAA
TTCAGCCGCCCGCAGGGGGGGATGTTCCTGTGGGCGCGTTTCCGCTATCCGTTCGATACCATGGAATGGATGAAGAAAAC
GCTGGAAAACGGCGTGGTGTACGTCCCGGGTGAAGCGTTCTATCACGATAAGCCGGATACCCGTACCCTGCGTCTTTCTT
ACTCCACGGTGTCAGAAGCCGGATTGCTGGCGGCCGTTGAGCGGCTGGCGGCCTCCCTGTAA

Upstream 100 bases:

>100_bases
TACTGAAAAGGATAGCCCCGGCATGGTAAGCGCCGCCGGGGAGCACCTGCAACAAAGCCAAGATAATTAACACAACAACA
AGACAGAAAAGGAAAATAGT

Downstream 100 bases:

>100_bases
CGTCTCTGCTGTGCGCCGCTTTTCGGCGGCGCGCAGCCCTGCGTGACGTTAACGTCCAGCGCAGGGTCAATCCGTTTCGG
CGATCCGGTCATCGAGCCAG

Product: putative aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MHDRRLAARAGELKPSAVRELLKHSKLPGVISLGGGIPAPELFDTEGLELAVQKVMSERFNDAFQYGLTEGYPPLRQAVS
EICHSRGVACSAAQVYITSGSQQSLDIVARTLLDPGDTIVVERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLE
TTRVKAVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVILEDDPYGEISFTDAVRRPLYQHAVELGCEDQVVYTSTFSK
ILAPGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLDNQIALIREDYRKKCVALADALESRLGEHLE
FSRPQGGMFLWARFRYPFDTMEWMKKTLENGVVYVPGEAFYHDKPDTRTLRLSYSTVSEAGLLAAVERLAASL

Sequences:

>Translated_393_residues
MHDRRLAARAGELKPSAVRELLKHSKLPGVISLGGGIPAPELFDTEGLELAVQKVMSERFNDAFQYGLTEGYPPLRQAVS
EICHSRGVACSAAQVYITSGSQQSLDIVARTLLDPGDTIVVERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLE
TTRVKAVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVILEDDPYGEISFTDAVRRPLYQHAVELGCEDQVVYTSTFSK
ILAPGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLDNQIALIREDYRKKCVALADALESRLGEHLE
FSRPQGGMFLWARFRYPFDTMEWMKKTLENGVVYVPGEAFYHDKPDTRTLRLSYSTVSEAGLLAAVERLAASL
>Mature_393_residues
MHDRRLAARAGELKPSAVRELLKHSKLPGVISLGGGIPAPELFDTEGLELAVQKVMSERFNDAFQYGLTEGYPPLRQAVS
EICHSRGVACSAAQVYITSGSQQSLDIVARTLLDPGDTIVVERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLE
TTRVKAVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVILEDDPYGEISFTDAVRRPLYQHAVELGCEDQVVYTSTFSK
ILAPGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLDNQIALIREDYRKKCVALADALESRLGEHLE
FSRPQGGMFLWARFRYPFDTMEWMKKTLENGVVYVPGEAFYHDKPDTRTLRLSYSTVSEAGLLAAVERLAASL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=422, Percent_Identity=28.6729857819905, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI33469970, Length=422, Percent_Identity=28.6729857819905, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI4507369, Length=212, Percent_Identity=25.9433962264151, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1787710, Length=357, Percent_Identity=28.0112044817927, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790797, Length=315, Percent_Identity=26.984126984127, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788722, Length=307, Percent_Identity=27.0358306188925, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6321236, Length=476, Percent_Identity=23.109243697479, Blast_Score=116, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6321929, Length=464, Percent_Identity=24.3534482758621, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321000, Length=191, Percent_Identity=31.413612565445, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356535, Length=395, Percent_Identity=26.8354430379747, Blast_Score=131, Evalue=6e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 43801; Mature: 43801

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS00879 ODR_DC_2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDRRLAARAGELKPSAVRELLKHSKLPGVISLGGGIPAPELFDTEGLELAVQKVMSERF
CCCHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NDAFQYGLTEGYPPLRQAVSEICHSRGVACSAAQVYITSGSQQSLDIVARTLLDPGDTIV
HHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCEEE
VERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLETTRVKAVYLVPTFGNPGGKT
EECCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCC
LSEARRRRLVELAKKYDFVILEDDPYGEISFTDAVRRPLYQHAVELGCEDQVVYTSTFSK
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHH
ILAPGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLDNQIALIREDY
HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RKKCVALADALESRLGEHLEFSRPQGGMFLWARFRYPFDTMEWMKKTLENGVVYVPGEAF
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEECCCCE
YHDKPDTRTLRLSYSTVSEAGLLAAVERLAASL
ECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHDRRLAARAGELKPSAVRELLKHSKLPGVISLGGGIPAPELFDTEGLELAVQKVMSERF
CCCHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NDAFQYGLTEGYPPLRQAVSEICHSRGVACSAAQVYITSGSQQSLDIVARTLLDPGDTIV
HHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCEEE
VERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLETTRVKAVYLVPTFGNPGGKT
EECCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCC
LSEARRRRLVELAKKYDFVILEDDPYGEISFTDAVRRPLYQHAVELGCEDQVVYTSTFSK
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHH
ILAPGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLDNQIALIREDY
HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RKKCVALADALESRLGEHLEFSRPQGGMFLWARFRYPFDTMEWMKKTLENGVVYVPGEAF
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEECCCCE
YHDKPDTRTLRLSYSTVSEAGLLAAVERLAASL
ECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]