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The map label for this gene is yicJ [H]

Identifier: 238893092

GI number: 238893092

Start: 918544

End: 919950

Strand: Reverse

Name: yicJ [H]

Synonym: KP1_0936

Alternate gene names: 238893092

Gene position: 919950-918544 (Counterclockwise)

Preceding gene: 238893093

Following gene: 238893091

Centisome position: 17.53

GC content: 55.01

Gene sequence:

>1407_bases
ATGGCAGAGAACACGCTTTCAATAAGAGAAAAGATTGGTTACGGGATGGGTGATGCCGGATGCAATATTATCTTTGGCGC
CATCATGCTGTTTGTGAACTATTTTTACACTGATATATTCGGACTGGCGCCGGCGCTGGTCGGCGTACTTCTGCTCTCGG
TGCGAGTCATCGATGCGGTAACCGACCCTATCATGGGCGCTCTTGCCGACCGCACCCGTAGTAAATATGGTCGCTTTCGT
CCATGGCTGCTGTGGATCGCCTTCCCCTACGCCCTGTTCAGCGTCCTGATGTTCACCACTCCTGAGTGGACCTACAATAG
CAAAGTCATCTATGCGTTTGTGACCTACTTTCTGCTGTCGATTACCTATACCGCGATTAATATTCCCTACTGCTCGCTGG
GAACGGTGATGACCGCCGATCCGAAAGAGCGTGTTGCCTGCCAGTCTTATCGTTTCGTCATGGTGGGTATCGCCACGCTC
CTGCTGTCATTGACGCTGCTGCCAATGGCCGACTGGTTCGGCGGCGCCGATAAAGCGAAGGGCTACCAGATGGCGATGAC
CGTGCTGGCCTTTATCGGTATGTGTATGTTCCTGTTCTGCTTCGCCACCGTGCGCGAACGTATCCGCCCGGCGGTGCAGA
CGAATGACGAACTGAAAAAAGATCTGAAAGACGTCTGGAAAAATGACCAGTGGGTGCGCATCCTGCTGCTCACGCTGTGC
AACGTCTGTCCGGGCTTTATCCGCATGGCCGCCACCATGTACTACGTCACCTGGGTGATGGGACAAAGCACCCATTTTGC
CACCCTGTTTATCAGCCTCGGCGTAGTTGGGATGATGATTGGCAGCATGCTGGCGAAAGTCCTGACCGACCGCTGGTGCA
AACTGCAGGTTTTCTTCTGGACCAATATCGTGCTGGCCGTGTTCTCCTGCGCCTTCTATTTCTTTAATCCACACGCCACC
ACGCTGATTATGGTGCTCTACTTCCTGCTCAACATTCTGCATCAAATCCCTTCCCCGCTACACTGGTCGCTAATGTCCGA
CGTTGACGACTACGGCGAATGGAAAACCGGCAAGCGCATCACCGGTATCAGCTTCTCCGGTAATCTGTTCTTCCTCAAGG
TCGGCCTGGCGGTCGCCGGGGCAATGGTCGGTTTCCTGCTGTCATGGTACGGCTACGACGCCGGCGCGAAAGCGCAAAGC
GCCTCCGCGCTGAACGGTATCGTGCTGCTATTCTCAGTCATTCCCGGCGTCGGCTATCTGATCACCGCCGGCGTGGTGCG
CCTGCTGAAGGTTGACCGTACCCTGATGCGCCAGATTCAGAGCGATCTGGAGAAGCGCCGCAGCAACTACAGCGAGCTGA
ACGAATACCAGGAACTGAAAACCAGTGAACACGTAAGGAAAGCCTGA

Upstream 100 bases:

>100_bases
CTCCATAGCTTATTTATCCATATCGTCAACGAGTTCCTGCAACGTATTTCTGCCAACCGCAGCCAATAATTCTCTCCATA
CTGCAACGGAGAGACCGCAC

Downstream 100 bases:

>100_bases
TGAACAACTGGCCAAACCCCTTTATTGAACAGCGTGCAGACCCCTTTATCCTGCGCCATCTTAGCCACTACTACTTTATT
GCCTCGGTGCCGGAATACGA

Product: putative permease of the Na+:galactoside symporter family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MAENTLSIREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPIMGALADRTRSKYGRFR
PWLLWIAFPYALFSVLMFTTPEWTYNSKVIYAFVTYFLLSITYTAINIPYCSLGTVMTADPKERVACQSYRFVMVGIATL
LLSLTLLPMADWFGGADKAKGYQMAMTVLAFIGMCMFLFCFATVRERIRPAVQTNDELKKDLKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLQVFFWTNIVLAVFSCAFYFFNPHAT
TLIMVLYFLLNILHQIPSPLHWSLMSDVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSWYGYDAGAKAQS
ASALNGIVLLFSVIPGVGYLITAGVVRLLKVDRTLMRQIQSDLEKRRSNYSELNEYQELKTSEHVRKA

Sequences:

>Translated_468_residues
MAENTLSIREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPIMGALADRTRSKYGRFR
PWLLWIAFPYALFSVLMFTTPEWTYNSKVIYAFVTYFLLSITYTAINIPYCSLGTVMTADPKERVACQSYRFVMVGIATL
LLSLTLLPMADWFGGADKAKGYQMAMTVLAFIGMCMFLFCFATVRERIRPAVQTNDELKKDLKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLQVFFWTNIVLAVFSCAFYFFNPHAT
TLIMVLYFLLNILHQIPSPLHWSLMSDVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSWYGYDAGAKAQS
ASALNGIVLLFSVIPGVGYLITAGVVRLLKVDRTLMRQIQSDLEKRRSNYSELNEYQELKTSEHVRKA
>Mature_467_residues
AENTLSIREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPIMGALADRTRSKYGRFRP
WLLWIAFPYALFSVLMFTTPEWTYNSKVIYAFVTYFLLSITYTAINIPYCSLGTVMTADPKERVACQSYRFVMVGIATLL
LSLTLLPMADWFGGADKAKGYQMAMTVLAFIGMCMFLFCFATVRERIRPAVQTNDELKKDLKDVWKNDQWVRILLLTLCN
VCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLQVFFWTNIVLAVFSCAFYFFNPHATT
LIMVLYFLLNILHQIPSPLHWSLMSDVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSWYGYDAGAKAQSA
SALNGIVLLFSVIPGVGYLITAGVVRLLKVDRTLMRQIQSDLEKRRSNYSELNEYQELKTSEHVRKA

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI122937339, Length=476, Percent_Identity=23.7394957983193, Blast_Score=76, Evalue=7e-14,
Organism=Escherichia coli, GI87082306, Length=462, Percent_Identity=43.2900432900433, Blast_Score=407, Evalue=1e-115,
Organism=Escherichia coli, GI1786466, Length=449, Percent_Identity=38.7527839643653, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1787902, Length=453, Percent_Identity=28.0353200883002, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI48994989, Length=470, Percent_Identity=27.4468085106383, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1790561, Length=457, Percent_Identity=28.2275711159737, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI145693206, Length=450, Percent_Identity=25.3333333333333, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52730; Mature: 52599

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AENTLSIREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAV
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]