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The map label for this gene is ltrA

Identifier: 238893013

GI number: 238893013

Start: 824485

End: 825414

Strand: Reverse

Name: ltrA

Synonym: KP1_0848

Alternate gene names: 238893013

Gene position: 825414-824485 (Counterclockwise)

Preceding gene: 238893022

Following gene: 238893005

Centisome position: 15.73

GC content: 61.51

Gene sequence:

>930_bases
ATGAATCTGAACCTCCTGCCCGACCTCGCTCTTTTCGTTCAGATAGTCGACCAGGGCAGCTTCTCCGCCGTCGCCCGCCA
GAACGGCATTACCCCTTCAGCCGTTAGCCGCAGCGTGTCACGGCTGGAGCGAGAGATGGGCTGCAAACTGCTGCAGCGTA
CCACCCGCAAGCTGCGTCTTAGCGATGCCGGGGAAACGATATATCAGCATGCCCAGCAGATGCTGGAAGCGGCGCGACAG
GCAATGGATTCCGCAGGCAGTCGCCAAACGGTCGCCCAGGGAAAGCTGACGCTCAGCGTCCCGAAAGCCGTCGGCCGCTT
TGTGATCCACCCGCTGATGATGGCGTTTTTCCACCGCTACCCGCAGGTGGACGTCTGCCTGCGGCTGGAAGATCGCCCTC
TCGATTTTATCGATGACGGTATTGATCTGGCGCTACGCATCACCGATACCCCCTCCCCCGGCCTGCACGGCAAACCGCTG
ATGCCAATCAGGCACGTTATCTGCGCCACTGAGGCCTATTTACAGCAGCATGGTACGCCGTACACGCCGCAGGATCTGCG
CGCGCATAGCTGCATTAGCCTTGGCGAAACGCCCGCCGATGCGCGCTGGAAGTTCCGCCGGGAAGGCAAAACAGAAACGG
TGCAAACCTACGGGCGGTACGCCGCCAACCATACCGCCGTACGCCTCGACGCGGTCAGACAGCATTTAGGGATCGGCAGC
CTGCCGCTGTTCACCGCCCGTGAGGCGCTGGCGAACGGCGACATCGTGCAGGTGCTGCCCGAGTGGGAATTTATCAGCAG
CTACTCCGGCGACCTGTGGCTGCTGTGGGCGGGAGATAAACATATGCCCGCCAGGATGCGGGCGATGATTGATTATCTCA
GCGAGACGGTGCCGGCGCTGAACGCAGGCAGCACAGAGCCAGCGAAATAA

Upstream 100 bases:

>100_bases
TCAGTCATAGTGATTCTCCTCTCTGTCCGGCCAGTATATTATTAATGCCGACAGCGATAATCCCACCACCAGCCAATGCA
CTCTTGCTCCGGGAGCACAA

Downstream 100 bases:

>100_bases
TTGCAAACCACGGAATGATAACTCCCAACACAAACCAGATCCCGGAGCGGCCGATATCATGCATTCGCCGGCAGCCTACA
GCCAGCAGGGGGAGCGCCAT

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETIYQHAQQMLEAARQ
AMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPL
MPIRHVICATEAYLQQHGTPYTPQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGS
LPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSETVPALNAGSTEPAK

Sequences:

>Translated_309_residues
MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETIYQHAQQMLEAARQ
AMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPL
MPIRHVICATEAYLQQHGTPYTPQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGS
LPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSETVPALNAGSTEPAK
>Mature_309_residues
MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETIYQHAQQMLEAARQ
AMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPL
MPIRHVICATEAYLQQHGTPYTPQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGS
LPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSETVPALNAGSTEPAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=30.1694915254237, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=28.8079470198675, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=27.4914089347079, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693193, Length=258, Percent_Identity=29.8449612403101, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=26.551724137931, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=267, Percent_Identity=24.3445692883895, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788706, Length=167, Percent_Identity=27.5449101796407, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI157672245, Length=158, Percent_Identity=28.4810126582279, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=114, Percent_Identity=30.7017543859649, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=156, Percent_Identity=30.1282051282051, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=176, Percent_Identity=27.8409090909091, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=157, Percent_Identity=27.3885350318471, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): LTRA_KLEPN (P52689)

Other databases:

- EMBL:   U31464
- PIR:   S70535
- ProteinModelPortal:   P52689
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 34358; Mature: 34358

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL
CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHC
PQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHVICATEAYLQQHGTP
CCEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
YTPQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGS
CCHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
LPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSETVPAL
CCHHHHHHHHCCCCEEEECCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
NAGSTEPAK
CCCCCCCCC
>Mature Secondary Structure
MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL
CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHC
PQVDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHVICATEAYLQQHGTP
CCEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
YTPQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGS
CCHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
LPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSETVPAL
CCHHHHHHHHCCCCEEEECCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
NAGSTEPAK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036