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The map label for this gene is ydiP [H]

Identifier: 238892950

GI number: 238892950

Start: 757990

End: 758898

Strand: Direct

Name: ydiP [H]

Synonym: KP1_0776

Alternate gene names: 238892950

Gene position: 757990-758898 (Clockwise)

Preceding gene: 238892949

Following gene: 238892951

Centisome position: 14.44

GC content: 54.57

Gene sequence:

>909_bases
GTGTCGCCTGAATTAAGAGGAGTCATCATGCCGTTCGTTCAAACCGTGCCCGTATTTAAGCTGTATGGCGAAGAGTGCGG
CTGGCCGACGCCGGACCTGCTGCACTGTGAGTCGATTTTACAGCGCAGCAGCCTGTATCAGTGGCATATTCGCGTCCATC
AGCATGCGGAAATGGTCCAGCTTCTCTATCTGCATCAGGGGCGGGCGGAGATCGAAATTGAAGGCGCCACCGCGGTGATG
ACGGAGTCCTGCATCCAGGTGGTTCCCGCCCTCTGTATTCACGGGTTTAATTTTTCACCCGGGACGCAAGGGTTTGTGCT
CTCTCTGGCGCTGCCGCTGCTGAGCCGGTTTGAAAATCAGTTCGGTCGCCCTCTGGATGTGCTTAGCGTGCCGCAGTGTG
TGCCGGTGGGCCGTTCTCGCGGGCGCATGCATACGCTGTTTTCAGCGCTTCGCGAGGAGTACTGCGAAGAGCACGATGCG
CGAGAAATGATGCTCTATTCGCTGCTGGGGACGCTGTTGGTCTGGCTGAACCGACAGTGCCATCCCGCGTCCCCCGCGGA
AGATAAAGCGGAGCGGAAGCGCAGCATGATGCGCCACTTCGCCCGCCTTATCGAGAGCCACTACCGACAGCATCTCCCGT
TGGCGGAGTATGCGAAGCTGATTGGACTGTCGGTTACGCACTTAAATTATTTATGTCGTGAGTTTTATGGCTGTAGCGCT
CTTGGAGTATTGCACCAGCGGTTGATGCTTGAAGCGCGACGCAATCTGCAGTACACCCGCATGACGATTACACAACTCTC
TGATTATTTGGGGTTTAGCGATGCAGCCTATTTTTCGCGTTTTTTCCGTCGCTATAGCGGTATGTCACCCAAAGCATTTA
GAGAAACAATTAAAGATAATGCTTCATAA

Upstream 100 bases:

>100_bases
TTCGACGCTAAAATGCAGGCCGCCGACCGCCGCTACTATCTGGGCTCGCGCGCCGGGCTGACCACCATCGCGGAAAACTA
CGTGGGCTTGCCCATGGAGC

Downstream 100 bases:

>100_bases
TGTTCAGTATTGAAATTATTTTTGCTAAATAATGTTTTTATCTTTTCTAATTTATTAGCGCAGGAACGTCTGTGTTAATA
TTAATCGCAAGTATACACGG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSPELRGVIMPFVQTVPVFKLYGEECGWPTPDLLHCESILQRSSLYQWHIRVHQHAEMVQLLYLHQGRAEIEIEGATAVM
TESCIQVVPALCIHGFNFSPGTQGFVLSLALPLLSRFENQFGRPLDVLSVPQCVPVGRSRGRMHTLFSALREEYCEEHDA
REMMLYSLLGTLLVWLNRQCHPASPAEDKAERKRSMMRHFARLIESHYRQHLPLAEYAKLIGLSVTHLNYLCREFYGCSA
LGVLHQRLMLEARRNLQYTRMTITQLSDYLGFSDAAYFSRFFRRYSGMSPKAFRETIKDNAS

Sequences:

>Translated_302_residues
MSPELRGVIMPFVQTVPVFKLYGEECGWPTPDLLHCESILQRSSLYQWHIRVHQHAEMVQLLYLHQGRAEIEIEGATAVM
TESCIQVVPALCIHGFNFSPGTQGFVLSLALPLLSRFENQFGRPLDVLSVPQCVPVGRSRGRMHTLFSALREEYCEEHDA
REMMLYSLLGTLLVWLNRQCHPASPAEDKAERKRSMMRHFARLIESHYRQHLPLAEYAKLIGLSVTHLNYLCREFYGCSA
LGVLHQRLMLEARRNLQYTRMTITQLSDYLGFSDAAYFSRFFRRYSGMSPKAFRETIKDNAS
>Mature_301_residues
SPELRGVIMPFVQTVPVFKLYGEECGWPTPDLLHCESILQRSSLYQWHIRVHQHAEMVQLLYLHQGRAEIEIEGATAVMT
ESCIQVVPALCIHGFNFSPGTQGFVLSLALPLLSRFENQFGRPLDVLSVPQCVPVGRSRGRMHTLFSALREEYCEEHDAR
EMMLYSLLGTLLVWLNRQCHPASPAEDKAERKRSMMRHFARLIESHYRQHLPLAEYAKLIGLSVTHLNYLCREFYGCSAL
GVLHQRLMLEARRNLQYTRMTITQLSDYLGFSDAAYFSRFFRRYSGMSPKAFRETIKDNAS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=260, Percent_Identity=23.0769230769231, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34819; Mature: 34688

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPELRGVIMPFVQTVPVFKLYGEECGWPTPDLLHCESILQRSSLYQWHIRVHQHAEMVQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLYLHQGRAEIEIEGATAVMTESCIQVVPALCIHGFNFSPGTQGFVLSLALPLLSRFENQ
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
FGRPLDVLSVPQCVPVGRSRGRMHTLFSALREEYCEEHDAREMMLYSLLGTLLVWLNRQC
HCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HPASPAEDKAERKRSMMRHFARLIESHYRQHLPLAEYAKLIGLSVTHLNYLCREFYGCSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
LGVLHQRLMLEARRNLQYTRMTITQLSDYLGFSDAAYFSRFFRRYSGMSPKAFRETIKDN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
AS
CC
>Mature Secondary Structure 
SPELRGVIMPFVQTVPVFKLYGEECGWPTPDLLHCESILQRSSLYQWHIRVHQHAEMVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]