Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 238892765

GI number: 238892765

Start: 560199

End: 561086

Strand: Reverse

Name: araQ [H]

Synonym: KP1_0568

Alternate gene names: 238892765

Gene position: 561086-560199 (Counterclockwise)

Preceding gene: 238892766

Following gene: 238892764

Centisome position: 10.69

GC content: 62.5

Gene sequence:

>888_bases
ATGAGCGCTGAAATCTCGCCGCTGCTGGTCCGCACGCCCGCCGCCGCCCGTCCGCTGTGGCTGCGCCTGCGCCGCTCGTC
GCCCTTTACGCTCACAGTATTAATGTGCTGCCTGGCGCTGCTGTGGGTCAGCCCGTTTATCTGGATGCTGGCGACCTCGT
TCAGCGCCACCACCTTCGGCGACGATATGGCGTCGCTGCTGCCCCGCCTGCCGCTGACCCTCGATAACTTCCGCGACGCC
TGGCAGAGCGCCGACTGGCTAAGCCTGTATACCAACACCCTTATCTTCACCTTCGGCACCTTCTTCGTGCAGCTGTTGAC
CATCACCACCGCCGGGTACGTCTTCGCCTGTCACGAGTTTCGCGGCAAGCAGACGCTGTTTCTCCTGTTCCTGGTGCAGC
TGATGATCATGCCGGTGGTGATGATGGTGCCGAACATGCTGACCCTGAAAACCTTCGGCCTGCTCAACACCCTCACCGGG
GTGATGATGCCCTATTTCACCTCGGCGTTCGGCGTGTTCCTGATGCGTCAGGCGTTCCTCGCCATCCCGAAAGAGCTGGA
GGAGGCGGCGCTGATGGAGGGCTGCCGCTGGTGGCAGGTGCTGTTCCGCGTGCTGCTGCCGATGTCCTGGCCATCGGTGC
TGGCCTTCGCCACCGTCAGCATTACCTACCACTGGAACGAGTACCTGTGGCCGCTGATGATGCTCAACGATCCCGATAAG
CAGGTGCTGACCGTCGGGCTGGTCTCCTTCGCCATGGGCGCCGAATCCGGCGGCCAGTGGGGCACCATCGGCGCCGGGAC
GCTGATGGTCTGCCTGCCGCTGATGCTGGCGTTCATCCTTTTTCAGAAACAGTTCCTGCGGAGCTTCGGCTTCTCCGGGA
TCAAATAA

Upstream 100 bases:

>100_bases
CACGACCTCGGTAAAGCCTCCGCCGCCACCTTCCTGACCCTGGCCGGGCTGTTCGCCTTCTCGCTGATTAACCTGAAACT
GCTGGAGAAAGGAGCCCACT

Downstream 100 bases:

>100_bases
GGAGTGATTCATGCTGTTAGCGCACATTTCCGATACCCATTTCCGCAGCCGCGGCGAGAAGCTGTACGGCTTTATCGACG
TCAATGCCGCCAACGCCGAC

Product: putative SN-glycerol-3-phosphate transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFGDDMASLLPRLPLTLDNFRDA
WQSADWLSLYTNTLIFTFGTFFVQLLTITTAGYVFACHEFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTG
VMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDK
QVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK

Sequences:

>Translated_295_residues
MSAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFGDDMASLLPRLPLTLDNFRDA
WQSADWLSLYTNTLIFTFGTFFVQLLTITTAGYVFACHEFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTG
VMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDK
QVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
>Mature_294_residues
SAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFGDDMASLLPRLPLTLDNFRDAW
QSADWLSLYTNTLIFTFGTFFVQLLTITTAGYVFACHEFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGV
MMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDKQ
VLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=266, Percent_Identity=22.1804511278195, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787571, Length=270, Percent_Identity=25.1851851851852, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790464, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33366; Mature: 33235

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFG
CCCCCCCEEEECCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
DDMASLLPRLPLTLDNFRDAWQSADWLSLYTNTLIFTFGTFFVQLLTITTAGYVFACHEF
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFL
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECHHHHHHHHEECCCCH
QVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFG
CCCCCCEEEECCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
DDMASLLPRLPLTLDNFRDAWQSADWLSLYTNTLIFTFGTFFVQLLTITTAGYVFACHEF
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFL
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECHHHHHHHHEECCCCH
QVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]