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The map label for this gene is yjdC [H]

Identifier: 238892612

GI number: 238892612

Start: 399422

End: 400045

Strand: Reverse

Name: yjdC [H]

Synonym: KP1_0391

Alternate gene names: 238892612

Gene position: 400045-399422 (Counterclockwise)

Preceding gene: 238892613

Following gene: 238892611

Centisome position: 7.62

GC content: 59.62

Gene sequence:

>624_bases
TTGGCAAGCGTGAGCGACACTTTAGGAGGAAAGATGGAGGAGAACACCGTGCTACGTGAAGACGTCCTGGCAGAAGCCAT
TAAGATTCTTGAAATTGAAGGTATCGCCAACACGTCGCTGGAGATGGTCGCTGAGCGCGTGTCCTGCCCGACGAGCGACC
TGAAACGCTTCTGGCCTGACCGCGAAGCGCTGCTGTACGACGCGCTTCGCTATCTGAGCCAGCAGGTGGATGCCTGGCGT
CGTCAGCTCCTGCTGGACGAGACCTTAAGCGCAGAGCAAAAGCTGCTGGCACGCTATGCCGCACTCACCACCTGCGTAAG
CAACCAGCGGTACCCGGGCTGCCTGTTTATCGCCGCCTGCACCTTCTACCCGGATCCTCAGCACCCCATTCACCAGCTGG
CGGAACAGCAGAAGCAGGCTTCGCTGGCCTACACTCACGAGCTGCTGACTCAGCTGGAGGTGGATGACCCGGAAATGGTC
GCCAAGCAGATGGAGCTGATTGTCGAGGGCTGTCTGAGCCGTCTGCTGGTCAAACGTAGCCAGACGGATGTGGATACCGC
CCGGCGGCTGGCTGAAGATATTCTACGCTTCGCCCAGTGCCGTATGGGTGGCGCCTTGACCTGA

Upstream 100 bases:

>100_bases
TGCCGACGATCCTGTTCTTCAACGCTGAGGGTCAGGAACAGCCTGAGCGGCGAGTCACCGGCTTTATGGATGCCGCGGCA
TTCAGCGCCCATTTGCGCGA

Downstream 100 bases:

>100_bases
TTCTGATATCCTAACCGCCACGTCGCGCCTATAATTTCCCCCTCACTGATTGCTGACAGGGATTGATATGCGCGCGTTCT
TCTGGGCTGCCTGGCTGGGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MASVSDTLGGKMEENTVLREDVLAEAIKILEIEGIANTSLEMVAERVSCPTSDLKRFWPDREALLYDALRYLSQQVDAWR
RQLLLDETLSAEQKLLARYAALTTCVSNQRYPGCLFIAACTFYPDPQHPIHQLAEQQKQASLAYTHELLTQLEVDDPEMV
AKQMELIVEGCLSRLLVKRSQTDVDTARRLAEDILRFAQCRMGGALT

Sequences:

>Translated_207_residues
MASVSDTLGGKMEENTVLREDVLAEAIKILEIEGIANTSLEMVAERVSCPTSDLKRFWPDREALLYDALRYLSQQVDAWR
RQLLLDETLSAEQKLLARYAALTTCVSNQRYPGCLFIAACTFYPDPQHPIHQLAEQQKQASLAYTHELLTQLEVDDPEMV
AKQMELIVEGCLSRLLVKRSQTDVDTARRLAEDILRFAQCRMGGALT
>Mature_206_residues
ASVSDTLGGKMEENTVLREDVLAEAIKILEIEGIANTSLEMVAERVSCPTSDLKRFWPDREALLYDALRYLSQQVDAWRR
QLLLDETLSAEQKLLARYAALTTCVSNQRYPGCLFIAACTFYPDPQHPIHQLAEQQKQASLAYTHELLTQLEVDDPEMVA
KQMELIVEGCLSRLLVKRSQTDVDTARRLAEDILRFAQCRMGGALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=189, Percent_Identity=78.3068783068783, Blast_Score=318, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23377; Mature: 23246

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVSDTLGGKMEENTVLREDVLAEAIKILEIEGIANTSLEMVAERVSCPTSDLKRFWPD
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCC
REALLYDALRYLSQQVDAWRRQLLLDETLSAEQKLLARYAALTTCVSNQRYPGCLFIAAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEH
TFYPDPQHPIHQLAEQQKQASLAYTHELLTQLEVDDPEMVAKQMELIVEGCLSRLLVKRS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
QTDVDTARRLAEDILRFAQCRMGGALT
CCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASVSDTLGGKMEENTVLREDVLAEAIKILEIEGIANTSLEMVAERVSCPTSDLKRFWPD
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCC
REALLYDALRYLSQQVDAWRRQLLLDETLSAEQKLLARYAALTTCVSNQRYPGCLFIAAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEH
TFYPDPQHPIHQLAEQQKQASLAYTHELLTQLEVDDPEMVAKQMELIVEGCLSRLLVKRS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
QTDVDTARRLAEDILRFAQCRMGGALT
CCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]