| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is pgaA [H]
Identifier: 238892604
GI number: 238892604
Start: 391870
End: 394359
Strand: Reverse
Name: pgaA [H]
Synonym: KP1_0383
Alternate gene names: 238892604
Gene position: 394359-391870 (Counterclockwise)
Preceding gene: 238892607
Following gene: 238892603
Centisome position: 7.51
GC content: 62.37
Gene sequence:
>2490_bases GTGTTGTGCAATGGATTCTTGATGAACATATGGCAAATAGAAATGGAAAGATCACCTTATTCAAATACGTTATTGTTTAA TCGCAACACGAAACTCTCGCTATCAATCGGCTTGCTTTTGCTCTTCCCGGCGCTGGTTCAGGGAGCGGATTCGCTCTATG ACCAGCAAATCTTGCAAGCGCGCCAAGGCCAGTACGCCCCCTTTCTCAGTTACCTTCAGCAGTACCAGCTGCGGCATGCC TTAACCCCTTCTCAGGTGGCGGACTGGCTGCAGGTGGCCCTCTGGGCCGGTCAGGACGATGAAGTGGTGAAAGTCTGGCG ACGCTACCAGGTCTATATGCCGATTCCCGCACGGGGCACCGCCGCCGCGGCGCAGGCCCTGCGCAACCAGAAGCAGTGGC AAACCTCGCTCACCCTCTGGCAGCAGGCACTCAGCCAGGCCCCTGGCAGCGACGACTATCGTATCGGCTATATCAAAACG CTCGCCGATGCCCGCAAGGACGGCGAGGCGCTCAGCGAAGCGCGTCGCCTGGTGGCGGAGCAGGCGAGCGTTGCGCACCT GCAGACGCTCTCCTATGTCTACCTGCGGCTGGGCAAAAGCTGGGACCAGCTGTTGGTGGACACGCAGATCCTCGATCGTG AACCGCAAAACAAAACCGCGCTGGCCAGCCTGATGGCGACCCTGACCCGCAACCGGATTGATTCCCCTGCTCTCGGCCTG GCGAATAGCGTCGAACTGACGCCTGCGGAAAAGCGTAACTTGCAGCTGAACGCCGCCGCCGAACTGGTGCGCCTTGCCGA TACCCCTTCCCGCGAAGAAAAGGCGCGTTACGCGCTGGCCCGCACGGCGCTCACGCAGTATGACGCGATGATCGCCGCCT GGCACCCCGACCCACAGGCTGCGCCCGACATCATCCGGGCGCGTATTGATCGTCTGGGCGCGCTGTACGCCAGCGCCGAG TACGCGCAGGTCATCCGCGAATACCAAAGCCTGATCGCCCAGCAGCAGACCGTTCCCGACTGGGCCATCGGCTGGGTCAT CTCCTCTTTTATCGCCCTTAAGCAAATTGAGCCTGCGCTGACGCTTATCCACCAGCATCCTTCGTGGCTGACAAGCCAAC AGAATGAGGAACACGAGCTTTTCTACGCTCTGCTGGACACCGGTCAGTACCCGGCGGCGCAACGGTATGTCGCCCGCCTC ACCAGGAATGCGCCCTACATCCGTCGTCTCTACGGCTCGCCAACGCCGCAGCCGAACGACGACTGGCTCACCGCACAGTC GCTTAACGTGCACTATTTAGCGGCTACCAACGACCTGCCGCAGGCCGAAGCCCGAATGCAGCGCCTGGCGGCGACGGCCC CTGGAAACCAGGGCCTGCAGATAGACTATGCCGCCCTTCTGCAGGAGAGAGGATTGCCACGGGCAGCCGAACGCCAGCTA AAAGCGGCGGAATCTCTGGAACCTGCCAGCCTGCAGCTGGAGCGCCAGCAGGCCTGGGTCGCCCTCGATCTGCAGGAGTG GCGGCAAATGGATCTGCTGGCTGACGACGTCGTCGCCCGCTCGCCACGGGATCTGAACACCCAGCGCCTGGCCAGAGCGC GCGAGATCCATCATCTCTCCGAGCTGCGCCTGAGCGTTGGCAAAGGGCTGCATTCCGACAACCCGGTGAGCGGCACGCAC GACCTCAGTTTTGAGACGGCGATCTACAGCCCGCCGCTAGCCGACAGCTGGCGGTTGTTCGGCGGGCACCGCTTCGCTGA AGGCAATTTTGAAGAGGGGAAAGGCAGCCGTCGCCAGCTGTTTGCCGGTATTGAATGGCGTCCGCGCGACTACTGGGGCG AGCTTGAGCTCTCCAGCGTCAATTTTCACGGCGAGAACAAGCCCGGCGTCCGCCTTTCCGCCGCCCATGACGTTAGCGAT CGCTGGCAGCTGGGCGGCGAACTGGAGCGGATTTCGCAGCAGACGCCGCTGCGCGCGTTACGCAACGGCGTCAGCGCCAA CCGCGGCGAAGGCTGGCTGCGCTGGTCTCCAAACGAACGCCGGGAGTACCGCTTCAGCGCGGCCGCCAGCCGGTTTACCG ATCGCAACCGCCGCCAGGAGTACACCCTCTCCGGTAAAGAACGCCTCTGGCAAACCCCATGGTTAACGCTGGATCTGCAG CCCGGTCTGTCGGCCAGCGCCAATAGCCGCACCGACACCGCCTACTACAGTCCGGCACGGGACCTCGCCGCCACCGCGGC GCTGGCCGTCGATCACACGCTTTACCAGCGCTATGACACCGTCTGGAGCCAGCAGTTACTCGCCGGCGGCGGCAGCTACT GGCAAAAAAATCACGCCGCCGGGGCGATCACGGTGCTGGGTTACGGGCAGCGCCTGCGCTGGAACAACGTCGTCGACACC GGGCTGATGCTGAACTGGGATAAGCGCCCCTACGACAGCAAACGTGAAAACAACCTCGCCATCACTCTTGATGCAAATAT ACGGTTTTAA
Upstream 100 bases:
>100_bases AGGAGATATGTTTATTAGTTTGCAATAGGTCATTCACCTGCAGTGCCAGTCAGCTAAATGGGACCATCCTCATCCTTTAA CTCACCGTCAAAGGACGGTC
Downstream 100 bases:
>100_bases GGATGACCATGCTGAACACGACCCTGCGCAACGGCCTGATGCTTCTCATCTGGCTGTGCCTTATCTTCAGCGTGCGTGCT GAGGAAGTCCCCTTCCTCGC
Product: outer membrane protein PgaA
Products: NA
Alternate protein names: PGA export protein; Poly-beta-1,6-GlcNAc export protein [H]
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MLCNGFLMNIWQIEMERSPYSNTLLFNRNTKLSLSIGLLLLFPALVQGADSLYDQQILQARQGQYAPFLSYLQQYQLRHA LTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPIPARGTAAAAQALRNQKQWQTSLTLWQQALSQAPGSDDYRIGYIKT LADARKDGEALSEARRLVAEQASVAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKTALASLMATLTRNRIDSPALGL ANSVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALTQYDAMIAAWHPDPQAAPDIIRARIDRLGALYASAE YAQVIREYQSLIAQQQTVPDWAIGWVISSFIALKQIEPALTLIHQHPSWLTSQQNEEHELFYALLDTGQYPAAQRYVARL TRNAPYIRRLYGSPTPQPNDDWLTAQSLNVHYLAATNDLPQAEARMQRLAATAPGNQGLQIDYAALLQERGLPRAAERQL KAAESLEPASLQLERQQAWVALDLQEWRQMDLLADDVVARSPRDLNTQRLARAREIHHLSELRLSVGKGLHSDNPVSGTH DLSFETAIYSPPLADSWRLFGGHRFAEGNFEEGKGSRRQLFAGIEWRPRDYWGELELSSVNFHGENKPGVRLSAAHDVSD RWQLGGELERISQQTPLRALRNGVSANRGEGWLRWSPNERREYRFSAAASRFTDRNRRQEYTLSGKERLWQTPWLTLDLQ PGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAAGAITVLGYGQRLRWNNVVDT GLMLNWDKRPYDSKRENNLAITLDANIRF
Sequences:
>Translated_829_residues MLCNGFLMNIWQIEMERSPYSNTLLFNRNTKLSLSIGLLLLFPALVQGADSLYDQQILQARQGQYAPFLSYLQQYQLRHA LTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPIPARGTAAAAQALRNQKQWQTSLTLWQQALSQAPGSDDYRIGYIKT LADARKDGEALSEARRLVAEQASVAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKTALASLMATLTRNRIDSPALGL ANSVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALTQYDAMIAAWHPDPQAAPDIIRARIDRLGALYASAE YAQVIREYQSLIAQQQTVPDWAIGWVISSFIALKQIEPALTLIHQHPSWLTSQQNEEHELFYALLDTGQYPAAQRYVARL TRNAPYIRRLYGSPTPQPNDDWLTAQSLNVHYLAATNDLPQAEARMQRLAATAPGNQGLQIDYAALLQERGLPRAAERQL KAAESLEPASLQLERQQAWVALDLQEWRQMDLLADDVVARSPRDLNTQRLARAREIHHLSELRLSVGKGLHSDNPVSGTH DLSFETAIYSPPLADSWRLFGGHRFAEGNFEEGKGSRRQLFAGIEWRPRDYWGELELSSVNFHGENKPGVRLSAAHDVSD RWQLGGELERISQQTPLRALRNGVSANRGEGWLRWSPNERREYRFSAAASRFTDRNRRQEYTLSGKERLWQTPWLTLDLQ PGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAAGAITVLGYGQRLRWNNVVDT GLMLNWDKRPYDSKRENNLAITLDANIRF >Mature_829_residues MLCNGFLMNIWQIEMERSPYSNTLLFNRNTKLSLSIGLLLLFPALVQGADSLYDQQILQARQGQYAPFLSYLQQYQLRHA LTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPIPARGTAAAAQALRNQKQWQTSLTLWQQALSQAPGSDDYRIGYIKT LADARKDGEALSEARRLVAEQASVAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKTALASLMATLTRNRIDSPALGL ANSVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALTQYDAMIAAWHPDPQAAPDIIRARIDRLGALYASAE YAQVIREYQSLIAQQQTVPDWAIGWVISSFIALKQIEPALTLIHQHPSWLTSQQNEEHELFYALLDTGQYPAAQRYVARL TRNAPYIRRLYGSPTPQPNDDWLTAQSLNVHYLAATNDLPQAEARMQRLAATAPGNQGLQIDYAALLQERGLPRAAERQL KAAESLEPASLQLERQQAWVALDLQEWRQMDLLADDVVARSPRDLNTQRLARAREIHHLSELRLSVGKGLHSDNPVSGTH DLSFETAIYSPPLADSWRLFGGHRFAEGNFEEGKGSRRQLFAGIEWRPRDYWGELELSSVNFHGENKPGVRLSAAHDVSD RWQLGGELERISQQTPLRALRNGVSANRGEGWLRWSPNERREYRFSAAASRFTDRNRRQEYTLSGKERLWQTPWLTLDLQ PGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAAGAITVLGYGQRLRWNNVVDT GLMLNWDKRPYDSKRENNLAITLDANIRF
Specific function: Exports the biofilm adhesin polysaccharide poly-beta- 1,6-N-acetyl-D-glucosamine (PGA) across the outer membrane. The PGA transported seems to be partially N-deacetylated since N- deacetylation of PGA by PgaB is needed for PGA export through the PgaA pori
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 TPR repeats [H]
Homologues:
Organism=Escherichia coli, GI1787261, Length=787, Percent_Identity=42.3125794155019, Blast_Score=621, Evalue=1e-179,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93872; Mature: 93872
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCNGFLMNIWQIEMERSPYSNTLLFNRNTKLSLSIGLLLLFPALVQGADSLYDQQILQA CCCCHHHHEEEEEEECCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH RQGQYAPFLSYLQQYQLRHALTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPIPARGT HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCCCCH AAAAQALRNQKQWQTSLTLWQQALSQAPGSDDYRIGYIKTLADARKDGEALSEARRLVAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHH QASVAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKTALASLMATLTRNRIDSPALGL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC ANSVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALTQYDAMIAAWHPDPQA CCCEEECCCHHCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCC APDIIRARIDRLGALYASAEYAQVIREYQSLIAQQQTVPDWAIGWVISSFIALKQIEPAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHH TLIHQHPSWLTSQQNEEHELFYALLDTGQYPAAQRYVARLTRNAPYIRRLYGSPTPQPND HHHHCCCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCC DWLTAQSLNVHYLAATNDLPQAEARMQRLAATAPGNQGLQIDYAALLQERGLPRAAERQL CEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHH KAAESLEPASLQLERQQAWVALDLQEWRQMDLLADDVVARSPRDLNTQRLARAREIHHLS HHHHCCCCCHHEEEHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ELRLSVGKGLHSDNPVSGTHDLSFETAIYSPPLADSWRLFGGHRFAEGNFEEGKGSRRQL HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCEEECCCCCCCCCCCHHHE FAGIEWRPRDYWGELELSSVNFHGENKPGVRLSAAHDVSDRWQLGGELERISQQTPLRAL EECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCHHHHCCCHHHHHHHCCHHHHH RNGVSANRGEGWLRWSPNERREYRFSAAASRFTDRNRRQEYTLSGKERLWQTPWLTLDLQ HCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHCCCCCEEEECC PGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC GAITVLGYGQRLRWNNVVDTGLMLNWDKRPYDSKRENNLAITLDANIRF CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure MLCNGFLMNIWQIEMERSPYSNTLLFNRNTKLSLSIGLLLLFPALVQGADSLYDQQILQA CCCCHHHHEEEEEEECCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH RQGQYAPFLSYLQQYQLRHALTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPIPARGT HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCCCCH AAAAQALRNQKQWQTSLTLWQQALSQAPGSDDYRIGYIKTLADARKDGEALSEARRLVAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHH QASVAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKTALASLMATLTRNRIDSPALGL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC ANSVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALTQYDAMIAAWHPDPQA CCCEEECCCHHCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCC APDIIRARIDRLGALYASAEYAQVIREYQSLIAQQQTVPDWAIGWVISSFIALKQIEPAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHH TLIHQHPSWLTSQQNEEHELFYALLDTGQYPAAQRYVARLTRNAPYIRRLYGSPTPQPND HHHHCCCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCC DWLTAQSLNVHYLAATNDLPQAEARMQRLAATAPGNQGLQIDYAALLQERGLPRAAERQL CEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHH KAAESLEPASLQLERQQAWVALDLQEWRQMDLLADDVVARSPRDLNTQRLARAREIHHLS HHHHCCCCCHHEEEHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ELRLSVGKGLHSDNPVSGTHDLSFETAIYSPPLADSWRLFGGHRFAEGNFEEGKGSRRQL HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCEEECCCCCCCCCCCHHHE FAGIEWRPRDYWGELELSSVNFHGENKPGVRLSAAHDVSDRWQLGGELERISQQTPLRAL EECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCHHHHCCCHHHHHHHCCHHHHH RNGVSANRGEGWLRWSPNERREYRFSAAASRFTDRNRRQEYTLSGKERLWQTPWLTLDLQ HCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHCCCCCEEEECC PGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC GAITVLGYGQRLRWNNVVDTGLMLNWDKRPYDSKRENNLAITLDANIRF CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]