Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is metG [H]
Identifier: 238028342
GI number: 238028342
Start: 3178789
End: 3180945
Strand: Direct
Name: metG [H]
Synonym: bglu_1g28030
Alternate gene names: 238028342
Gene position: 3178789-3180945 (Clockwise)
Preceding gene: 238028341
Following gene: 238028345
Centisome position: 81.37
GC content: 66.67
Gene sequence:
>2157_bases ATGTCCGCATCCGATCTCAATACCGTGCAGGCCGGCGCACCCTCGAGCCGCCGCCAGATCCTCGTCACTTCCGCACTGCC CTACGCGAACGGGCAAATCCACATCGGCCACCTGGTCGAGTACATCCAGACCGACATCTGGGTGCGGACGCTGCGAATGC ACGGCCACGAGGTCTATTACATCGGCGCCGACGACACGCACGGCACGCCGATCATGCTGCGCGCCGAGCAGGAAGGCATC ACGCCCAAGCAGCTGATCGAGCGCGTCTGGCGCGAGCACAAGCGTGACTTCGACAGCTACGCGATCTCGTTCGACAACTT CTACACCACGGACTCCGACGAGAACCGCGTGCTGAGCGAGACCATCTACCTGGCGCTGAAGGATGCCGGGCTGATCGCCG AGCGCGACATCGAGCAGGCTTACGACCCCGTCAAGCAAATGTTCCTGCCGGACCGCTTCATCAAGGGCGAGTGCCCGAAG TGCCACGCGAAGGACCAGTACGGCGACAGCTGCGAGGTGTGCGGCTCGACCTATCAGCCCACCGAGCTGCTCAATCCGTA CTCGGTGGTGTCGGGCGCCACGCCGGTGCGCAAGACGTCCACGCATCACTTCTTCAAGCTGTCCGACCCGCGCTGCGAAA ACTTCCTGCGCGGCTGGGTGGGCGGGCTCGCGCAGCCCGAGGCCACCAACAAGATGCGCGAATGGCTCGGCGAGGCCGGC GAAGCGAAGCTGGCCGACTGGGACATCTCGCGCGATGCGCCCTACTTCGGCTTCGAGATCCCCGGCGCGCCCGGCAAGTA CTTCTATGTCTGGCTCGACGCGCCGGTGGGCTACTACGCGAGCTTCAAGAACCACTGCGAGAAGCTCGGGCTCGACTTCG ACGCCTGGACGCGTCCCGGCTCGACGACCGAGCAGTATCACTTCATCGGCAAGGACATCCTTTATTTCCACACGCTGTTC TGGCCCGCGATGCTCGAGTTCTCGGGCCACCGCACGCCGACCAACGTGTTCGCGCACGGCTTCCTGACCGTGGACGGCGC CAAGATGTCGAAGTCGCGCGGCACCTTCATCACGGCGCAGAGCTATATCGACGCGGGCCTGAACCCGGAGTGGCTGCGCT ACTACTTCGCCGCGAAGCTGAACGCGACGATGGAAGACCTCGACCTGAATCTCGAGGACTTCCAGGCGCGCGTGAACAGC GACCTGGTGGGCAAGTACGTGAACATCGCGAGCCGGGCGGCGGGCTTCCTGATCAAGCGCTTCGAGGGCCGCGTGCAGGA CAGCGCGATGAACCACCCGCTGCTCGCCTCGCTGCGCGGCACGATTCCGCAGATCGCCGCGCACTACGAGGCGCGCGAAT ACGGCCGCGCGCTGCGCCAGACCATGGAGCTGGCCGACGCCGTGAACGGCTACGTCGACACCGCCAAGCCCTGGGAGCAG GCCAAGGACCCGGCCAACGCGGTGGCGCTGCACGAGACCTGCAGCGTGAGCCTGGAGGCGTTCCGCCTGCTGTCGCTCGC GCTCAAGCCGGTGCTGCCGCGCGTGGTCGAAGCGGTCGAGGCGTTCCTCGGCATCGCGCCGCTGACCTGGGCGAGCGTCG CGACGCCGCTCTCGTCGACGCAGCCCGTCAACGCCTACCAGCACCTGATGACGCGCGTCGATCCGAAGCAGATCGCGGCG CTGCTGGAGGCGAACCACGGCTCGCTCGCGGCGGCCGACGCGGCGGCCAGTGCCGCGAGCGCCGATCCGAAGGCGAAAGG CGCCAAGGACGCCAAGCCGGCCAAGGACGCGAAGACCGCGGCCGCGACCGGCGACGGCACGATCTCGATCGACGACTTCA CGAAGATCGACCTGCGGATCGCGAAGATCGTCGCGTGCCAGGCCGTGGAGGGCTCGGACAAGCTGCTGCAGCTCACGCTC GACGTGGGCGAGGAAAAGACGCGCAACGTGTTCTCGGGGATCAAGTCGGCCTACCGGCCCGAGGATCTGGTGGGCAAGCT GACCGTGATGGTCGCCAACCTCGCGCCGCGCAAGATGAAGTTCGGCATGTCCGAAGGCATGGTGCTGGCCGCCTCGGCCA AGGACGAGAAGTCGGAACCGGGCCTCTACATCCTCGAGCCGCACAGCGGCGCCAAGCCGGGCATGCGCGTGAGCTGA
Upstream 100 bases:
>100_bases CCGCCACGCGGGGAGCACTCGCGCACCGCCTGCTAGAATCTCGCATTCCGACGCATTCCCGACCCGAGCCGCGACCTGCG CGGCCATCCCTGACGACCCT
Downstream 100 bases:
>100_bases AGGCGCGCCCCCGCCGCGCTTCATGCGCTTGCCGCGGCACCCGGAAAAAAACCCGCTCGACGAGCGGGTTTTTTCATGCG CGCGGCGGCAACGCCGTCAG
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MSASDLNTVQAGAPSSRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEQEGI TPKQLIERVWREHKRDFDSYAISFDNFYTTDSDENRVLSETIYLALKDAGLIAERDIEQAYDPVKQMFLPDRFIKGECPK CHAKDQYGDSCEVCGSTYQPTELLNPYSVVSGATPVRKTSTHHFFKLSDPRCENFLRGWVGGLAQPEATNKMREWLGEAG EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNHCEKLGLDFDAWTRPGSTTEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDAGLNPEWLRYYFAAKLNATMEDLDLNLEDFQARVNS DLVGKYVNIASRAAGFLIKRFEGRVQDSAMNHPLLASLRGTIPQIAAHYEAREYGRALRQTMELADAVNGYVDTAKPWEQ AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVVEAVEAFLGIAPLTWASVATPLSSTQPVNAYQHLMTRVDPKQIAA LLEANHGSLAAADAAASAASADPKAKGAKDAKPAKDAKTAAATGDGTISIDDFTKIDLRIAKIVACQAVEGSDKLLQLTL DVGEEKTRNVFSGIKSAYRPEDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAKDEKSEPGLYILEPHSGAKPGMRVS
Sequences:
>Translated_718_residues MSASDLNTVQAGAPSSRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEQEGI TPKQLIERVWREHKRDFDSYAISFDNFYTTDSDENRVLSETIYLALKDAGLIAERDIEQAYDPVKQMFLPDRFIKGECPK CHAKDQYGDSCEVCGSTYQPTELLNPYSVVSGATPVRKTSTHHFFKLSDPRCENFLRGWVGGLAQPEATNKMREWLGEAG EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNHCEKLGLDFDAWTRPGSTTEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDAGLNPEWLRYYFAAKLNATMEDLDLNLEDFQARVNS DLVGKYVNIASRAAGFLIKRFEGRVQDSAMNHPLLASLRGTIPQIAAHYEAREYGRALRQTMELADAVNGYVDTAKPWEQ AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVVEAVEAFLGIAPLTWASVATPLSSTQPVNAYQHLMTRVDPKQIAA LLEANHGSLAAADAAASAASADPKAKGAKDAKPAKDAKTAAATGDGTISIDDFTKIDLRIAKIVACQAVEGSDKLLQLTL DVGEEKTRNVFSGIKSAYRPEDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAKDEKSEPGLYILEPHSGAKPGMRVS >Mature_717_residues SASDLNTVQAGAPSSRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEQEGIT PKQLIERVWREHKRDFDSYAISFDNFYTTDSDENRVLSETIYLALKDAGLIAERDIEQAYDPVKQMFLPDRFIKGECPKC HAKDQYGDSCEVCGSTYQPTELLNPYSVVSGATPVRKTSTHHFFKLSDPRCENFLRGWVGGLAQPEATNKMREWLGEAGE AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNHCEKLGLDFDAWTRPGSTTEQYHFIGKDILYFHTLFW PAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDAGLNPEWLRYYFAAKLNATMEDLDLNLEDFQARVNSD LVGKYVNIASRAAGFLIKRFEGRVQDSAMNHPLLASLRGTIPQIAAHYEAREYGRALRQTMELADAVNGYVDTAKPWEQA KDPANAVALHETCSVSLEAFRLLSLALKPVLPRVVEAVEAFLGIAPLTWASVATPLSSTQPVNAYQHLMTRVDPKQIAAL LEANHGSLAAADAAASAASADPKAKGAKDAKPAKDAKTAAATGDGTISIDDFTKIDLRIAKIVACQAVEGSDKLLQLTLD VGEEKTRNVFSGIKSAYRPEDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAKDEKSEPGLYILEPHSGAKPGMRVS
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI14043022, Length=590, Percent_Identity=26.1016949152542, Blast_Score=209, Evalue=8e-54, Organism=Homo sapiens, GI24308436, Length=553, Percent_Identity=25.8589511754069, Blast_Score=152, Evalue=1e-36, Organism=Homo sapiens, GI4507947, Length=149, Percent_Identity=31.5436241610738, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1788432, Length=707, Percent_Identity=53.041018387553, Blast_Score=736, Evalue=0.0, Organism=Caenorhabditis elegans, GI17540794, Length=602, Percent_Identity=27.2425249169435, Blast_Score=225, Evalue=8e-59, Organism=Caenorhabditis elegans, GI212645096, Length=546, Percent_Identity=22.8937728937729, Blast_Score=123, Evalue=4e-28, Organism=Caenorhabditis elegans, GI71992781, Length=283, Percent_Identity=25.7950530035336, Blast_Score=96, Evalue=7e-20, Organism=Saccharomyces cerevisiae, GI6321704, Length=565, Percent_Identity=27.0796460176991, Blast_Score=219, Evalue=2e-57, Organism=Saccharomyces cerevisiae, GI6321610, Length=545, Percent_Identity=24.954128440367, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI24655311, Length=635, Percent_Identity=28.0314960629921, Blast_Score=212, Evalue=8e-55, Organism=Drosophila melanogaster, GI21358483, Length=552, Percent_Identity=26.4492753623188, Blast_Score=132, Evalue=9e-31,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 [H]
Pfam domain/function: PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 79228; Mature: 79097
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50886 TRBD ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASDLNTVQAGAPSSRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYY CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPIMLRAEQEGITPKQLIERVWREHKRDFDSYAISFDNFYTTDSDENRVLSE EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHEEEEECCEECCCCCCCHHHHH TIYLALKDAGLIAERDIEQAYDPVKQMFLPDRFIKGECPKCHAKDQYGDSCEVCGSTYQP HHEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCC TELLNPYSVVSGATPVRKTSTHHFFKLSDPRCENFLRGWVGGLAQPEATNKMREWLGEAG HHHCCCHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNHCEKLGLDFDAWTRPG CCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCC STTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDAGLNPEWLRYYFAAKLNATMEDLDLNLEDFQARVNSDLVGKYVNIASRAAGFLIKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FEGRVQDSAMNHPLLASLRGTIPQIAAHYEAREYGRALRQTMELADAVNGYVDTAKPWEQ HHCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVVEAVEAFLGIAPLTWASVATPLSST CCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC QPVNAYQHLMTRVDPKQIAALLEANHGSLAAADAAASAASADPKAKGAKDAKPAKDAKTA CCCHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH AATGDGTISIDDFTKIDLRIAKIVACQAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYRP CCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCC EDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAKDEKSEPGLYILEPHSGAKPGMRVS HHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCC >Mature Secondary Structure SASDLNTVQAGAPSSRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYY CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPIMLRAEQEGITPKQLIERVWREHKRDFDSYAISFDNFYTTDSDENRVLSE EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHEEEEECCEECCCCCCCHHHHH TIYLALKDAGLIAERDIEQAYDPVKQMFLPDRFIKGECPKCHAKDQYGDSCEVCGSTYQP HHEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCC TELLNPYSVVSGATPVRKTSTHHFFKLSDPRCENFLRGWVGGLAQPEATNKMREWLGEAG HHHCCCHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNHCEKLGLDFDAWTRPG CCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCC STTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDAGLNPEWLRYYFAAKLNATMEDLDLNLEDFQARVNSDLVGKYVNIASRAAGFLIKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FEGRVQDSAMNHPLLASLRGTIPQIAAHYEAREYGRALRQTMELADAVNGYVDTAKPWEQ HHCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVVEAVEAFLGIAPLTWASVATPLSST CCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC QPVNAYQHLMTRVDPKQIAALLEANHGSLAAADAAASAASADPKAKGAKDAKPAKDAKTA CCCHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH AATGDGTISIDDFTKIDLRIAKIVACQAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYRP CCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCC EDLVGKLTVMVANLAPRKMKFGMSEGMVLAASAKDEKSEPGLYILEPHSGAKPGMRVS HHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA