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The map label for this gene is yiaD [H]

Identifier: 238028341

GI number: 238028341

Start: 3177635

End: 3178294

Strand: Direct

Name: yiaD [H]

Synonym: bglu_1g28020

Alternate gene names: 238028341

Gene position: 3177635-3178294 (Clockwise)

Preceding gene: 238028335

Following gene: 238028342

Centisome position: 81.34

GC content: 73.03

Gene sequence:

>660_bases
ATGAATACCAAAATCGCGACGCGCCTCTCCGTCTTCGCCATCGCCGGCGCCCTGCTCGCCGGCTGCGCCACGCCACAGGG
CAACAACACCGCCGTGGGCACCGGCGCGGGCGCCGCGCTCGGCGCGGGCATCGGCGCGCTGGCGGGCGGCGGCAAGGGCG
CGGCGATCGGCGCCGGGATCGGCGCGCTGGCCGGCGGCGTGGCCGGCTACAACTGGCAGGCGATCAAGAACCGCCTCGCG
CCGTCGGCGCAGAGCACCGGCACGCAGGTGACCGAGCAGCCGGACGGCTCGCTGAAGCTGAACGTGCCGAGCTCGGTGAC
GTTCGCGACCGACCAGTACGCGATCACACCGGCATTCGCCCCGCTGCTCAACGAGCTGGCCACCTCGCTGAACCAGAATC
CGCAGATCACCGCCTCGGTGGTCGGCTATACCGACAGCACCGGCTCGGCCGCGCACAACCTGACGCTGTCGCAGAACCGC
GCGCAGAGCGTGGTCACCGCGCTGGTGCAGCGCGGCGTGGCGGGCAGCCGCCTGTCGGCGCAGGGCATGGGCGCCTCGAA
CCCGGTGGCCGACAACGCGACCGACGCCGGCCGCGCCCAGAACCGCCGCGTCGAGATCTACCTGCGCGCCCCGCAGCAGC
CGCAGCAGCAGCCGCAATAA

Upstream 100 bases:

>100_bases
CCTTGGTCCCGAACAGGGCTTGCGGCCTGCGTGCAAGGCCCGCCCTCGGGCCTTGCATCAGCGTAGTGACCGATTCGTTC
ACTTCAGAAAGGAACTCGAC

Downstream 100 bases:

>100_bases
CGCGCACCGACCGCAGGGCGGGCTCGCGCCGATCGCTCGCCGGCCCGCCCGACAAGCCTTGCGGCGGCCCGGCTCGAGCA
CCGAAAATTTTTTCGAACTT

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNTKIATRLSVFAIAGALLAGCATPQGNNTAVGTGAGAALGAGIGALAGGGKGAAIGAGIGALAGGVAGYNWQAIKNRLA
PSAQSTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFAPLLNELATSLNQNPQITASVVGYTDSTGSAAHNLTLSQNR
AQSVVTALVQRGVAGSRLSAQGMGASNPVADNATDAGRAQNRRVEIYLRAPQQPQQQPQ

Sequences:

>Translated_219_residues
MNTKIATRLSVFAIAGALLAGCATPQGNNTAVGTGAGAALGAGIGALAGGGKGAAIGAGIGALAGGVAGYNWQAIKNRLA
PSAQSTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFAPLLNELATSLNQNPQITASVVGYTDSTGSAAHNLTLSQNR
AQSVVTALVQRGVAGSRLSAQGMGASNPVADNATDAGRAQNRRVEIYLRAPQQPQQQPQ
>Mature_219_residues
MNTKIATRLSVFAIAGALLAGCATPQGNNTAVGTGAGAALGAGIGALAGGGKGAAIGAGIGALAGGVAGYNWQAIKNRLA
PSAQSTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFAPLLNELATSLNQNPQITASVVGYTDSTGSAAHNLTLSQNR
AQSVVTALVQRGVAGSRLSAQGMGASNPVADNATDAGRAQNRRVEIYLRAPQQPQQQPQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=206, Percent_Identity=42.2330097087379, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787191, Length=132, Percent_Identity=37.1212121212121, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788957, Length=117, Percent_Identity=32.4786324786325, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21793; Mature: 21793

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKIATRLSVFAIAGALLAGCATPQGNNTAVGTGAGAALGAGIGALAGGGKGAAIGAGI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCHHHHCCCCCCCCHHHHH
GALAGGVAGYNWQAIKNRLAPSAQSTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFA
HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNELATSLNQNPQITASVVGYTDSTGSAAHNLTLSQNRAQSVVTALVQRGVAGSRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCC
QGMGASNPVADNATDAGRAQNRRVEIYLRAPQQPQQQPQ
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNTKIATRLSVFAIAGALLAGCATPQGNNTAVGTGAGAALGAGIGALAGGGKGAAIGAGI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCHHHHCCCCCCCCHHHHH
GALAGGVAGYNWQAIKNRLAPSAQSTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFA
HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNELATSLNQNPQITASVVGYTDSTGSAAHNLTLSQNRAQSVVTALVQRGVAGSRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCC
QGMGASNPVADNATDAGRAQNRRVEIYLRAPQQPQQQPQ
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]