| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028277
Identifier: 238028277
GI number: 238028277
Start: 3103210
End: 3105354
Strand: Reverse
Name: 238028277
Synonym: bglu_1g27340
Alternate gene names: NA
Gene position: 3105354-3103210 (Counterclockwise)
Preceding gene: 238028278
Following gene: 238028276
Centisome position: 79.49
GC content: 62.42
Gene sequence:
>2145_bases ATGGATTTCTTGATCAACTATCTCGATACGGCTCAGACGGTGAAGGACGTCATCCGCCGACTGGCTGCGCTGCTCCGACC GCCGGAGAAGATTGGTACGACGGAGTGGGCGACAAATTACCGCCGGATGAGTGCGAAGGCGGCGGCGAAGCCCGGACGCT ATAACCCCAACGTCACGCCGTGGGTTATCGGCATGCACGCTGCGCTAGACGATCCAAAGGTGCAGAAGGTCGTGTGCATG AAGTCAGCGCAGGTCGCATGGACCGATGGCGTACTGCTCAACTACATCGGCAAGCGGATTGACGTTGATCCGTGCCCAAT GATTGTGATGTTTCCAAAGGAGGGCGCTGCGAAAGATTTCAGCAACGAGAAATTCAAGCCCATGGTGGAGGTGACGCCGC GCCTGCTATCAAAGTTGCCAGTTCAGGCTCGACGAGACAAAAACAACTTGTGGTATCACAAGACGTTTCCTCGTGGGTTC TTGAAGTTCGTTACCTCGAATTCACCGACTGCGGTTAAGTCGACGCCGGCCCCCGTGGTGGCGGTGGAGGAGCCCGACGA CGCGAACACCAACGTGCGCGAGCAGGGTGACTCGATCACTCTGCTAGAGGAGCGGACCAAGAGCTATTCGGACAGCCGGC GCAAGGTGATCTTCGGCGGCACGCCAACGGTCGATGGCTTCTCGCGGATCCAGGCGGCGTATCACGCGTCGGACCAGCGC GTGTTCCTCGTGCCTTGCCCTGATTGTGGCGAAGAGCACGAACTGGCATGGGAGAACGTTACCTGGACTGATGACGCTGA AAAGCCGCATGAAGTGTTCGGGCGGGCGCGGCCTGATTCGGCCCGCTACATCTGTCCGCACTGCGGATCGTTGTGGGACG ATGCCGCAAGGATCCGGGCGGTGCGCAAGGGGCGCTGGCTCGCAACGGCGCCGTTCCATGGTGTTGCGGGCTTCCGGCTG AATGAGCTTGTGTCGCCGTTCCCCGGCTCGCGTATGCCGGAACTGGTCAAGAAGTGGCTCACGGCCGAAAAGGCGCTGCT CGCGGGCGACGACACGAAAATGCGGTCGTTCGTGAACAACTCGCAGGGGCGGCCCTACAAGTACAAGAGCGACTTGCCCG AGCTGGATGAGCTGGCCGAACGCGCGATGCCCTATGCGGCATTCACGGTGCCGGCAGGCGGCCTGCTGCTGACGCTGGGT GTCGACGTGCAACACGATCGGATCGCGCTTGTTCTGCGCGCATGGGGGCGGGGCGAGGAAAGCTGGCTGGTCGTGTGGGA CGAGATCCATGGCAACGTGCTGCATCAAGACGAGAATCCGCTCGAAGGTGGTGTATGGGGCGCGTTGACCGAGATGCTGA TGAGTGGCTATCGCCACGAAACCGGCGGTGTGCTCCGGATCCGCGCGATGTCGATCGACTCGTCGGACGGCTCGACGTCG GACGCCGTCTACAAGTACGTGCGAGCCGCGCGGCGAGTCGGCCTAAATGTCATGGCGATCAAGGGCAGCACCGATGCGAA CGCGGAGGTTTTCAGCGTACCGAAGCAGTCGGTCGACTCGACACGGAACAACAGCAAGGCGGCGAAGTATGGCTTGCGCC CATTCATGGTGGGCGTGAGCAAGGCGAAAGACCTGATTCTCGAGAATCGTTTCAAGCTGGACGGCGAGGGGCCGGGGCGC ATGCACTGGTATGTCGGGGTGCGCTCCGACTACCTGTCGCAAGTCACGGCCGAGGTGAAGGTTCCGGGGCGCATCGGTTC GAAGCGAGTCTGGCAGAAGAAAGCCGGTGCCCGAAACGAGGCGCTGGACTGCGAGGTCTACGCCCTGCACGCGGCTCGCA GCGTGAAAACGCACATGATGACGGAAGCGCACTGGAGCGTGGAGCAGGTCCGCATCTCGCAGTCGTCGTTGTTCGAGGCA GTGCCGATTCTGGAAGCGCTGCCGTCCGCGTTGCCGATCGAGGAAGTGCCGGATCCGCCGGCCGAGTTGGTGCCGTCCGA GACGACGGAGCCGGCGCCTACGCAGCCGGTGCCTACTCAGCCGGTGCCGCAACAAATCAAACCCGCCGAAACCCCGCCAC CGAGCGGGGTTTCGCGCATTCAGGGGCGTCGCATGGGCCGGTCGAGCTATCTCGGGCGGCGCTAG
Upstream 100 bases:
>100_bases TTTCAGATTGAGCTGTTGGCCTTCCCGGACAGCTTGGTCCAAGAACTACGCACGTTGTACGGCGTGGACGTCGATGTCGA ATGGCTGAATGAGCACATTT
Downstream 100 bases:
>100_bases GAGGTAGAGCATGGCATACACGAGGCAGGATCTGGAGCGCGTCCAGTCGGCAATCGCCAAGGGCGAGCTGGAGGTGCAGT ACGCCGACAGGCGCGTGCGT
Product: phage terminase large subunit (GpA)
Products: NA
Alternate protein names: Phage Terminase GpA; Terminase GpA; Terminase Large Subunit; Bacteriophage Tail Assembly Protein; DNA Packaging Protein Of Prophage; Bacteriophage Terminase Large Subunit; Prophage LambdaW1 Terminase Large Subunit; DNA Packaging Protein Of Putative Prophage; Bacteriophage Tail Assembly Protein-Like Protein; Phage-Related Terminase Large Subunit; Prophage; DNA Packaging R; Large Subunit Of DNA Packaging Dimer; Phage Terminase GpA Family Protein; Terminase Gpa; Terminase Large Subunit Of Phage Lambda; DNA Packaging Protein
Number of amino acids: Translated: 714; Mature: 714
Protein sequence:
>714_residues MDFLINYLDTAQTVKDVIRRLAALLRPPEKIGTTEWATNYRRMSAKAAAKPGRYNPNVTPWVIGMHAALDDPKVQKVVCM KSAQVAWTDGVLLNYIGKRIDVDPCPMIVMFPKEGAAKDFSNEKFKPMVEVTPRLLSKLPVQARRDKNNLWYHKTFPRGF LKFVTSNSPTAVKSTPAPVVAVEEPDDANTNVREQGDSITLLEERTKSYSDSRRKVIFGGTPTVDGFSRIQAAYHASDQR VFLVPCPDCGEEHELAWENVTWTDDAEKPHEVFGRARPDSARYICPHCGSLWDDAARIRAVRKGRWLATAPFHGVAGFRL NELVSPFPGSRMPELVKKWLTAEKALLAGDDTKMRSFVNNSQGRPYKYKSDLPELDELAERAMPYAAFTVPAGGLLLTLG VDVQHDRIALVLRAWGRGEESWLVVWDEIHGNVLHQDENPLEGGVWGALTEMLMSGYRHETGGVLRIRAMSIDSSDGSTS DAVYKYVRAARRVGLNVMAIKGSTDANAEVFSVPKQSVDSTRNNSKAAKYGLRPFMVGVSKAKDLILENRFKLDGEGPGR MHWYVGVRSDYLSQVTAEVKVPGRIGSKRVWQKKAGARNEALDCEVYALHAARSVKTHMMTEAHWSVEQVRISQSSLFEA VPILEALPSALPIEEVPDPPAELVPSETTEPAPTQPVPTQPVPQQIKPAETPPPSGVSRIQGRRMGRSSYLGRR
Sequences:
>Translated_714_residues MDFLINYLDTAQTVKDVIRRLAALLRPPEKIGTTEWATNYRRMSAKAAAKPGRYNPNVTPWVIGMHAALDDPKVQKVVCM KSAQVAWTDGVLLNYIGKRIDVDPCPMIVMFPKEGAAKDFSNEKFKPMVEVTPRLLSKLPVQARRDKNNLWYHKTFPRGF LKFVTSNSPTAVKSTPAPVVAVEEPDDANTNVREQGDSITLLEERTKSYSDSRRKVIFGGTPTVDGFSRIQAAYHASDQR VFLVPCPDCGEEHELAWENVTWTDDAEKPHEVFGRARPDSARYICPHCGSLWDDAARIRAVRKGRWLATAPFHGVAGFRL NELVSPFPGSRMPELVKKWLTAEKALLAGDDTKMRSFVNNSQGRPYKYKSDLPELDELAERAMPYAAFTVPAGGLLLTLG VDVQHDRIALVLRAWGRGEESWLVVWDEIHGNVLHQDENPLEGGVWGALTEMLMSGYRHETGGVLRIRAMSIDSSDGSTS DAVYKYVRAARRVGLNVMAIKGSTDANAEVFSVPKQSVDSTRNNSKAAKYGLRPFMVGVSKAKDLILENRFKLDGEGPGR MHWYVGVRSDYLSQVTAEVKVPGRIGSKRVWQKKAGARNEALDCEVYALHAARSVKTHMMTEAHWSVEQVRISQSSLFEA VPILEALPSALPIEEVPDPPAELVPSETTEPAPTQPVPTQPVPQQIKPAETPPPSGVSRIQGRRMGRSSYLGRR >Mature_714_residues MDFLINYLDTAQTVKDVIRRLAALLRPPEKIGTTEWATNYRRMSAKAAAKPGRYNPNVTPWVIGMHAALDDPKVQKVVCM KSAQVAWTDGVLLNYIGKRIDVDPCPMIVMFPKEGAAKDFSNEKFKPMVEVTPRLLSKLPVQARRDKNNLWYHKTFPRGF LKFVTSNSPTAVKSTPAPVVAVEEPDDANTNVREQGDSITLLEERTKSYSDSRRKVIFGGTPTVDGFSRIQAAYHASDQR VFLVPCPDCGEEHELAWENVTWTDDAEKPHEVFGRARPDSARYICPHCGSLWDDAARIRAVRKGRWLATAPFHGVAGFRL NELVSPFPGSRMPELVKKWLTAEKALLAGDDTKMRSFVNNSQGRPYKYKSDLPELDELAERAMPYAAFTVPAGGLLLTLG VDVQHDRIALVLRAWGRGEESWLVVWDEIHGNVLHQDENPLEGGVWGALTEMLMSGYRHETGGVLRIRAMSIDSSDGSTS DAVYKYVRAARRVGLNVMAIKGSTDANAEVFSVPKQSVDSTRNNSKAAKYGLRPFMVGVSKAKDLILENRFKLDGEGPGR MHWYVGVRSDYLSQVTAEVKVPGRIGSKRVWQKKAGARNEALDCEVYALHAARSVKTHMMTEAHWSVEQVRISQSSLFEA VPILEALPSALPIEEVPDPPAELVPSETTEPAPTQPVPTQPVPQQIKPAETPPPSGVSRIQGRRMGRSSYLGRR
Specific function: Unknown
COG id: COG5525
COG function: function code R; Bacteriophage tail assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79355; Mature: 79355
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFLINYLDTAQTVKDVIRRLAALLRPPEKIGTTEWATNYRRMSAKAAAKPGRYNPNVTP CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC WVIGMHAALDDPKVQKVVCMKSAQVAWTDGVLLNYIGKRIDVDPCPMIVMFPKEGAAKDF EEEEEEHHCCCCHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCC SNEKFKPMVEVTPRLLSKLPVQARRDKNNLWYHKTFPRGFLKFVTSNSPTAVKSTPAPVV CCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEECCCCCEE AVEEPDDANTNVREQGDSITLLEERTKSYSDSRRKVIFGGTPTVDGFSRIQAAYHASDQR EEECCCCCCCCHHHCCCCEEEHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCE VFLVPCPDCGEEHELAWENVTWTDDAEKPHEVFGRARPDSARYICPHCGSLWDDAARIRA EEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHH VRKGRWLATAPFHGVAGFRLNELVSPFPGSRMPELVKKWLTAEKALLAGDDTKMRSFVNN HHCCCEEEECCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC SQGRPYKYKSDLPELDELAERAMPYAAFTVPAGGLLLTLGVDVQHDRIALVLRAWGRGEE CCCCCEECCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCC SWLVVWDEIHGNVLHQDENPLEGGVWGALTEMLMSGYRHETGGVLRIRAMSIDSSDGSTS CEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCH DAVYKYVRAARRVGLNVMAIKGSTDANAEVFSVPKQSVDSTRNNSKAAKYGLRPFMVGVS HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCHHHHHHCCCCCHHHHHCCCHHHHHHH KAKDLILENRFKLDGEGPGRMHWYVGVRSDYLSQVTAEVKVPGRIGSKRVWQKKAGARNE HHHHHHHHCCEEECCCCCCEEEEEEECCHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCC ALDCEVYALHAARSVKTHMMTEAHWSVEQVRISQSSLFEAVPILEALPSALPIEEVPDPP CCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHCCCCC AELVPSETTEPAPTQPVPTQPVPQQIKPAETPPPSGVSRIQGRRMGRSSYLGRR HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCCC >Mature Secondary Structure MDFLINYLDTAQTVKDVIRRLAALLRPPEKIGTTEWATNYRRMSAKAAAKPGRYNPNVTP CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC WVIGMHAALDDPKVQKVVCMKSAQVAWTDGVLLNYIGKRIDVDPCPMIVMFPKEGAAKDF EEEEEEHHCCCCHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCC SNEKFKPMVEVTPRLLSKLPVQARRDKNNLWYHKTFPRGFLKFVTSNSPTAVKSTPAPVV CCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEECCCCCEE AVEEPDDANTNVREQGDSITLLEERTKSYSDSRRKVIFGGTPTVDGFSRIQAAYHASDQR EEECCCCCCCCHHHCCCCEEEHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCE VFLVPCPDCGEEHELAWENVTWTDDAEKPHEVFGRARPDSARYICPHCGSLWDDAARIRA EEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHH VRKGRWLATAPFHGVAGFRLNELVSPFPGSRMPELVKKWLTAEKALLAGDDTKMRSFVNN HHCCCEEEECCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC SQGRPYKYKSDLPELDELAERAMPYAAFTVPAGGLLLTLGVDVQHDRIALVLRAWGRGEE CCCCCEECCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCC SWLVVWDEIHGNVLHQDENPLEGGVWGALTEMLMSGYRHETGGVLRIRAMSIDSSDGSTS CEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCH DAVYKYVRAARRVGLNVMAIKGSTDANAEVFSVPKQSVDSTRNNSKAAKYGLRPFMVGVS HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCHHHHHHCCCCCHHHHHCCCHHHHHHH KAKDLILENRFKLDGEGPGRMHWYVGVRSDYLSQVTAEVKVPGRIGSKRVWQKKAGARNE HHHHHHHHCCEEECCCCCCEEEEEEECCHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCC ALDCEVYALHAARSVKTHMMTEAHWSVEQVRISQSSLFEAVPILEALPSALPIEEVPDPP CCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHCCCCC AELVPSETTEPAPTQPVPTQPVPQQIKPAETPPPSGVSRIQGRRMGRSSYLGRR HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA