| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028261
Identifier: 238028261
GI number: 238028261
Start: 3090065
End: 3091234
Strand: Reverse
Name: 238028261
Synonym: bglu_1g27150
Alternate gene names: NA
Gene position: 3091234-3090065 (Counterclockwise)
Preceding gene: 238028262
Following gene: 238028260
Centisome position: 79.13
GC content: 64.53
Gene sequence:
>1170_bases ATGGGAGCAACATCGTTTTTCCATGGCATCACGACGACGATCGTCGACTCGGGGCCGCGCACGATCGCCGTGCCGTCGTC GTCGGTGGTGGGGCTCGTTGATACGTACGCACCACGTGTCGGTCTGGCGCAGCCGAACATGCCCGTGCAACTGACGAGCT ATCGCGATGCGGTGATGGCGTTCGGCGACACGAGCGCCATCGCGCGAGCTGCGCGCGCGATCTATGCGCAGAGCCGTGCG GTGATCGTCGCGGTGGGCGTGCCGGCCGACGGCGACGAGGCGCAGCGCACTTCGGCCGTGATCGGGGGCGTGACGGCAGG CGGAGCGCGTACGGGCATGCAGGCGCTGCTCGATGGGAAGTCGCGGTTCAACGCACAGCCGCGTTTGCTGATCGCACCGG GACACTCGGCCAAGCAGGCGGTCGCGACGGCGGCAGACGAAATCGCGGCGAAGCTGCGCGGAATCGCCGTGATAGACGGC CCGAACGAGGACGACGAGGCAGCGATTGCCTATGCGCAGAACTTCGGCAGCAAGCGGCTCTACATGGTCGATCCTGGCTC GACGATGTGGGATACGACGGCAAACGCCGATGTCGCGGTGCCGTCGTCGGTGTTCGCGGCCGGCCTGTTCTGCCAGACCG ACGCCAACATTGGCTTCTGGGCGTCGCCGTCGAACAAGGAAATCACGGGCATCACGGCAACGGCTCGGCCAATCGAATAC CTCGATGGCGACGAGACCTGCCGCGCGAACCTCCTGAACAACGCCAATATCGCGACCATCATCCGCGACGGCGGGTATCG GCTGTGGGGCAATCGGACGCTGTCGGCGGATCCGAAGTGGAAGTTCGTCACACGCGTGCGCACGCTCGACATCGTCATGG ACGCGGTCCAGGCCGGGCACAAATGGGCGGTGGACCGCGGCATCACGGCGACCTACGTTAGCGACGTGACGGAGGGGCTG CAGGCGTTCATGCGCGACCTGAAGCGCCAGGGTGCCCTCATCAATTTCGAGGTCTATCCGGATCCCGAGCTGAACACGGC CAGCCAGCTGGAGGACGGCAAGGTGTACTGGAACATCCGCTTTACCGATGTACCGCCGGCCGAAAACCCAATTTTCCGCT TCGAGGTCACCAATCAGTGGATGACCGAAGTGCTCGATAACCAGGTCTAA
Upstream 100 bases:
>100_bases CGGATGCCGACAGCGCTCGTGAAAAGTAACTTTTCAGACATTGATTCAATCATTCATAGAGCCGCCCACTTGGGCGGCTT TCTCATTTCTGGAGACCGGT
Downstream 100 bases:
>100_bases GGGGGAAAGATGGTTCCGGAAACTCTGTACAACTGCTCGGTGGCGGTGGACGGTCGCGGGTACGCTGGCCGGGCGACGGG CATGACGCCGCCGAAACTGA
Product: phage tail sheath protein
Products: NA
Alternate protein names: Phage Tail Sheath Protein; Bacteriophage Tail Sheath Protein; Phage Tail Sheath Protein FI; Phage Tail Sheath Protein; Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Phage-Related Tail Protein; Phage TAIL SHEATH PROTEIN; Phage Tail Sheath-Like Protein; Prophage; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Tail Sheath Protein Bacteriophage; Bacteriophage Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein GPFI; Phage Tail Sheath Protein FI-Like Protein; Pyocin R2_PP Tail Sheath Protein GpFI; Pyocin R2_PP Tail Sheath Protein; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Bacteriophage Contractile Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MGATSFFHGITTTIVDSGPRTIAVPSSSVVGLVDTYAPRVGLAQPNMPVQLTSYRDAVMAFGDTSAIARAARAIYAQSRA VIVAVGVPADGDEAQRTSAVIGGVTAGGARTGMQALLDGKSRFNAQPRLLIAPGHSAKQAVATAADEIAAKLRGIAVIDG PNEDDEAAIAYAQNFGSKRLYMVDPGSTMWDTTANADVAVPSSVFAAGLFCQTDANIGFWASPSNKEITGITATARPIEY LDGDETCRANLLNNANIATIIRDGGYRLWGNRTLSADPKWKFVTRVRTLDIVMDAVQAGHKWAVDRGITATYVSDVTEGL QAFMRDLKRQGALINFEVYPDPELNTASQLEDGKVYWNIRFTDVPPAENPIFRFEVTNQWMTEVLDNQV
Sequences:
>Translated_389_residues MGATSFFHGITTTIVDSGPRTIAVPSSSVVGLVDTYAPRVGLAQPNMPVQLTSYRDAVMAFGDTSAIARAARAIYAQSRA VIVAVGVPADGDEAQRTSAVIGGVTAGGARTGMQALLDGKSRFNAQPRLLIAPGHSAKQAVATAADEIAAKLRGIAVIDG PNEDDEAAIAYAQNFGSKRLYMVDPGSTMWDTTANADVAVPSSVFAAGLFCQTDANIGFWASPSNKEITGITATARPIEY LDGDETCRANLLNNANIATIIRDGGYRLWGNRTLSADPKWKFVTRVRTLDIVMDAVQAGHKWAVDRGITATYVSDVTEGL QAFMRDLKRQGALINFEVYPDPELNTASQLEDGKVYWNIRFTDVPPAENPIFRFEVTNQWMTEVLDNQV >Mature_388_residues GATSFFHGITTTIVDSGPRTIAVPSSSVVGLVDTYAPRVGLAQPNMPVQLTSYRDAVMAFGDTSAIARAARAIYAQSRAV IVAVGVPADGDEAQRTSAVIGGVTAGGARTGMQALLDGKSRFNAQPRLLIAPGHSAKQAVATAADEIAAKLRGIAVIDGP NEDDEAAIAYAQNFGSKRLYMVDPGSTMWDTTANADVAVPSSVFAAGLFCQTDANIGFWASPSNKEITGITATARPIEYL DGDETCRANLLNNANIATIIRDGGYRLWGNRTLSADPKWKFVTRVRTLDIVMDAVQAGHKWAVDRGITATYVSDVTEGLQ AFMRDLKRQGALINFEVYPDPELNTASQLEDGKVYWNIRFTDVPPAENPIFRFEVTNQWMTEVLDNQV
Specific function: Unknown
COG id: COG3497
COG function: function code R; Phage tail sheath protein FI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41724; Mature: 41593
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATSFFHGITTTIVDSGPRTIAVPSSSVVGLVDTYAPRVGLAQPNMPVQLTSYRDAVMA CCCCHHHHCCEEEEECCCCCEEEECCCCEEEEHHHCCCCCCCCCCCCCEEEECCCCEEEE FGDTSAIARAARAIYAQSRAVIVAVGVPADGDEAQRTSAVIGGVTAGGARTGMQALLDGK CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCEECCCHHHHHHHHHCCH SRFNAQPRLLIAPGHSAKQAVATAADEIAAKLRGIAVIDGPNEDDEAAIAYAQNFGSKRL HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCEE YMVDPGSTMWDTTANADVAVPSSVFAAGLFCQTDANIGFWASPSNKEITGITATARPIEY EEECCCCCEECCCCCCCEECCHHHHHHEEEEEECCCCEEEECCCCCEEEEEEECCCCHHH LDGDETCRANLLNNANIATIIRDGGYRLWGNRTLSADPKWKFVTRVRTLDIVMDAVQAGH CCCCCHHHHHHCCCCCEEEEEECCCEEEECCEEECCCCCEEEHHHHHHHHHHHHHHHCCC KWAVDRGITATYVSDVTEGLQAFMRDLKRQGALINFEVYPDPELNTASQLEDGKVYWNIR EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHCCCCCEEEEEEE FTDVPPAENPIFRFEVTNQWMTEVLDNQV EECCCCCCCCEEEEEECHHHHHHHHCCCC >Mature Secondary Structure GATSFFHGITTTIVDSGPRTIAVPSSSVVGLVDTYAPRVGLAQPNMPVQLTSYRDAVMA CCCHHHHCCEEEEECCCCCEEEECCCCEEEEHHHCCCCCCCCCCCCCEEEECCCCEEEE FGDTSAIARAARAIYAQSRAVIVAVGVPADGDEAQRTSAVIGGVTAGGARTGMQALLDGK CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCEECCCHHHHHHHHHCCH SRFNAQPRLLIAPGHSAKQAVATAADEIAAKLRGIAVIDGPNEDDEAAIAYAQNFGSKRL HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCEE YMVDPGSTMWDTTANADVAVPSSVFAAGLFCQTDANIGFWASPSNKEITGITATARPIEY EEECCCCCEECCCCCCCEECCHHHHHHEEEEEECCCCEEEECCCCCEEEEEEECCCCHHH LDGDETCRANLLNNANIATIIRDGGYRLWGNRTLSADPKWKFVTRVRTLDIVMDAVQAGH CCCCCHHHHHHCCCCCEEEEEECCCEEEECCEEECCCCCEEEHHHHHHHHHHHHHHHCCC KWAVDRGITATYVSDVTEGLQAFMRDLKRQGALINFEVYPDPELNTASQLEDGKVYWNIR EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHCCCCCEEEEEEE FTDVPPAENPIFRFEVTNQWMTEVLDNQV EECCCCCCCCEEEEEECHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA