Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028245
Identifier: 238028245
GI number: 238028245
Start: 3077980
End: 3078384
Strand: Direct
Name: 238028245
Synonym: bglu_1g26990
Alternate gene names: NA
Gene position: 3077980-3078384 (Clockwise)
Preceding gene: 238028244
Following gene: 238028246
Centisome position: 78.79
GC content: 65.68
Gene sequence:
>405_bases ATGGGCCGAGCCATGATCTGCGTCGGCGACACTACGACGCACGGTGGGCGCGTGCTGGAGGGCAGCGCAATCGCCACCAT TGACGGGAAGCCCATCGCGGGCGTGGGTCACAAGGTACTTTGCCCTCAGTGCAAAGGCGTCTTCCCCATCCTCCCCGCCA CCGGGCGGCGTTACCCGCACCAAATTACGGGCCGCGACACCGCCATCCAAGGCATGAAAACCGCATGTGGCGCCACGCTC ATCGCCAGCCAATCGGCCACGACACTAGACGACGTCGGCGCGGGCGAAGCAATGACTGGCGGTGCCGTCGCTGCCGCTAC AGGGCTGGCCCCATCCTCGACGCTCTGCCTTGAATGCCTGAAGTCTGCGGCCGAAAACGCCGCGACGATGATTGCGCGCG GATAG
Upstream 100 bases:
>100_bases CGAAGAGTTATCCACACCGGAATAGATGTACTACGCTGTCTCGGGGTGGGTCAGATTTAGATGAAATCGGTGGGTTAAGA CTCGGTGGAAATCAACACAT
Downstream 100 bases:
>100_bases GCTCATGACGAACGTCTCAATCGAAGCGTTTTTCTCCCAGCGACAACAGCAGGTGACCATACGAGCACACCTGTATGCGC TCGTCGACGGCTTACTGCTC
Product: PAAR repeat-containing protein
Products: NA
Alternate protein names: Bacteriophage; PAAR Motif Family; PaaR Motif-Containing Protein; Paar Repeat-Containing Protein; PAAR Motif-Containing Protein
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MGRAMICVGDTTTHGGRVLEGSAIATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQITGRDTAIQGMKTACGATL IASQSATTLDDVGAGEAMTGGAVAAATGLAPSSTLCLECLKSAAENAATMIARG
Sequences:
>Translated_134_residues MGRAMICVGDTTTHGGRVLEGSAIATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQITGRDTAIQGMKTACGATL IASQSATTLDDVGAGEAMTGGAVAAATGLAPSSTLCLECLKSAAENAATMIARG >Mature_133_residues GRAMICVGDTTTHGGRVLEGSAIATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQITGRDTAIQGMKTACGATLI ASQSATTLDDVGAGEAMTGGAVAAATGLAPSSTLCLECLKSAAENAATMIARG
Specific function: Unknown
COG id: COG4104
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13312; Mature: 13180
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRAMICVGDTTTHGGRVLEGSAIATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPH CCCEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCCEEECCCCCCCEEECCCCCCCCCC QITGRDTAIQGMKTACGATLIASQSATTLDDVGAGEAMTGGAVAAATGLAPSSTLCLECL EECCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH KSAAENAATMIARG HHHHHHHHHEEECC >Mature Secondary Structure GRAMICVGDTTTHGGRVLEGSAIATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPH CCEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCCEEECCCCCCCEEECCCCCCCCCC QITGRDTAIQGMKTACGATLIASQSATTLDDVGAGEAMTGGAVAAATGLAPSSTLCLECL EECCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH KSAAENAATMIARG HHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA