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The map label for this gene is yciR [C]

Identifier: 238028235

GI number: 238028235

Start: 3061138

End: 3063507

Strand: Direct

Name: yciR [C]

Synonym: bglu_1g26890

Alternate gene names: 238028235

Gene position: 3061138-3063507 (Clockwise)

Preceding gene: 238028234

Following gene: 238028236

Centisome position: 78.36

GC content: 67.72

Gene sequence:

>2370_bases
ATGAATTCTCCCCGTCACCTCACCGCGCACGCGCGCCTGTCCCGTGGGCGGAAGACCCGCCGCCGCGCGCTGTTCGCGAT
CCCCCTGCTCGGGGTGATCGCGCTCGCGCTGCTGTGGGCGGTGATCGTCATGCGGCTGGCGGTCGAGAAGGACAGCGCCT
ATCGCGAGGCGGCCGCCTCCGCCGCGATTCTTTCCACCGCGCTCGAGCAGCATACCGTCAAGGCGATCCACCAGGTCGAC
CAGATCACGCGCTTCGTCAAATACGAGTTCGAGAAGTCGCCCGATCACTTCAACCTCGCGAGCACGGTCGAAAAGGGCGT
GGTGCCGAGCGACACGCTGATCCAGGTCTCGATCCTGGACGCCAAGGGACGTCTGGTCGCCAATACCAGCGAGCAGCACC
CGAAGCCGCTCGATTTCTCGGACCGCGAGCATTTCCAGGTCCACGCGAGCCACAACGACGACGAGCTCTACATCAGCCGC
CCGGTGCTCGGCCGCGTGTCGCGCCAGTGGACCCTGCAGATGACGCGCCGGCTCAACACGCCCGACGGCAAGTTCGCCGG
CGTGGTGGTGGTGTCCGAGGATCCGAGCTACTTCACCAGCGATTTCTACAACAATGCGGCGATCGGCAAGGACGGCGTGA
TCGCGGTGATCTCCGACACCGGCGCGGTGCTGGCGCGCCGCACCGGCTCGTCGGCCAGCGCGGCGGGCGCGTTCTCGGCC
AGCGGCGTCTACCCGATCGCCGAGCGCGTGTCGGGCACCTACGCGGATCCGATCGACGGCACCCAGCGCATCGTCTCATA
CCGGCACCTGGACGGCTATCCGCTCGGCGTGCTGGTCGGACTCTCGCAGGCCGAGGAAATGTCCGACTACCACCATACGC
GCAACATCTACCTGCTGATGACGAGCTTCATCACGCTCGCGATGCTGGCGTTCTTCGGCGTGGCCACCGGGCTGATCGGC
AAGCTGCTCGGGCGTGAACGCGAGATGACGCACCTTGCCGAATACGACCTGCTGACCGGCCTGGCGAACCGCTACACGAC
GCTGCGCGCGCTGCGCAACGAGGTGGCGCAGCCCTCCAGCCTCAAGCGGCTCGCGATCCTGTTCATCGATCTCGACAACT
TCAAGACCGTCAACGACACGCTCGGCCACAACGCCGGCGACATCGTGCTGCAGATGACGGCGGCCCGCCTGTCCGACGCC
GTGGCCGACCAGGGCACGCTCGCGCGGATCGGCGGCGACGAATTCGTGGTGGTGGTCAAGGGCGACGGCGCCGAGGCCCG
CGCGGTGCGGCTCGCCGAATCGGTGATCCGCATGTTCGGCAAGCCGTTCGACGTGCGCGGCAGCACCTTCGTGCTGCACG
CGAGCATCGGCATCGCGCTGCATTCGGTGGCCAACGAAAGCGAGATCGACCTGCTCAAGAAAGCCGACCTGGCGATGTAC
AGCGCCAAGGACGCCGGCAAGAACTGCTACCAGTTCTACGCGCCGCACCTCTCGCATCGCGCCGACCACCTGATGCGCTG
GGAACAGCAACTGCGCGTGGCGCTGGCCGAGGGGAAGCTGTTCCTCGCCTACCAGCCGAAGATCGACCTGGCGCGGCGCT
GCATCACCGGCTTCGAGGCACTGGTGCGCTGGGACCATCCCGAGCACGGCGTGATCGCCGCCAGCGAGTTCATCTCGATC
GCCGAATCGACCGGGTTGATCGTGCCGATCGGCGACTACGTGGTGCGCACCGCCTGCCAGCAGCTCGCGCGCTGGCAGGA
GGAAGGCCACGACACGCTGACGCTGGCCGTCAACGTCTCGCCCGTGCAGTTCTGGCGCGGCGACCTGATCGAGACGATCT
CGAACGCGCTCGGCGAGACCCGCATCGATGCGAGCCGGCTCGAGATCGAGATCACCGAGACCGCGATGATGGAGTACCCC
GATCTCGTCTCGGACAAGATCGTGGCGCTGAAGAAGCTCGGCATCCGCATCGCGCTCGACGATTTCGGCACCGGCTATTC
GTCGCTGTCCTACCTGCACCGCTTCGCCGTCGATACGCTGAAGGTGGACCGCTCGTTCGTGCAGGCGATTCCGGCGGACC
GCAGCGTGTGCGTGATGGTGTCGTCGATCGTGCATCTGGCGCGCGCGCTCGGGCTGACGGTGGTGGTCGAGGGCACCGAG
ACGGACGAGCAGGTCGACTGGCTCTCGGCGCTGGGACCGATCCAGGCGCAAGGCTTCCTGTTCTCGCGGCCGGTGCCGGC
CGACGCGATTCCCGCCCTGCTCGCCCGCTTCGGCGTGTGCGGCGCGCCCGAGCCGCGCGCCATGGCCGAGACGCCGCCGC
GCGCGCTCGGCGGTCGGACCGACGCGCCGGGCGAAGGCGGCAACGACTGA

Upstream 100 bases:

>100_bases
CGGCCCGCAGATGCGCTGCCGGTTCCACGCATGCCATCGCGAGCTGTCGTTGCCGTCGTGTCCAAACACGCATCCATGTC
GAACAGCCGTTAGCCATCCG

Downstream 100 bases:

>100_bases
GCGGCAACAACTGAGCGGCACCGGCTGAGCGGCACCGGCGGCCGCCGCGCCCGATGCGGCCATCGCGCGACGATCGCGAC
GATCGCAGCAAGCGCAGCAA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MNSPRHLTAHARLSRGRKTRRRALFAIPLLGVIALALLWAVIVMRLAVEKDSAYREAAASAAILSTALEQHTVKAIHQVD
QITRFVKYEFEKSPDHFNLASTVEKGVVPSDTLIQVSILDAKGRLVANTSEQHPKPLDFSDREHFQVHASHNDDELYISR
PVLGRVSRQWTLQMTRRLNTPDGKFAGVVVVSEDPSYFTSDFYNNAAIGKDGVIAVISDTGAVLARRTGSSASAAGAFSA
SGVYPIAERVSGTYADPIDGTQRIVSYRHLDGYPLGVLVGLSQAEEMSDYHHTRNIYLLMTSFITLAMLAFFGVATGLIG
KLLGREREMTHLAEYDLLTGLANRYTTLRALRNEVAQPSSLKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDA
VADQGTLARIGGDEFVVVVKGDGAEARAVRLAESVIRMFGKPFDVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMY
SAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEALVRWDHPEHGVIAASEFISI
AESTGLIVPIGDYVVRTACQQLARWQEEGHDTLTLAVNVSPVQFWRGDLIETISNALGETRIDASRLEIEITETAMMEYP
DLVSDKIVALKKLGIRIALDDFGTGYSSLSYLHRFAVDTLKVDRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTE
TDEQVDWLSALGPIQAQGFLFSRPVPADAIPALLARFGVCGAPEPRAMAETPPRALGGRTDAPGEGGND

Sequences:

>Translated_789_residues
MNSPRHLTAHARLSRGRKTRRRALFAIPLLGVIALALLWAVIVMRLAVEKDSAYREAAASAAILSTALEQHTVKAIHQVD
QITRFVKYEFEKSPDHFNLASTVEKGVVPSDTLIQVSILDAKGRLVANTSEQHPKPLDFSDREHFQVHASHNDDELYISR
PVLGRVSRQWTLQMTRRLNTPDGKFAGVVVVSEDPSYFTSDFYNNAAIGKDGVIAVISDTGAVLARRTGSSASAAGAFSA
SGVYPIAERVSGTYADPIDGTQRIVSYRHLDGYPLGVLVGLSQAEEMSDYHHTRNIYLLMTSFITLAMLAFFGVATGLIG
KLLGREREMTHLAEYDLLTGLANRYTTLRALRNEVAQPSSLKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDA
VADQGTLARIGGDEFVVVVKGDGAEARAVRLAESVIRMFGKPFDVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMY
SAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEALVRWDHPEHGVIAASEFISI
AESTGLIVPIGDYVVRTACQQLARWQEEGHDTLTLAVNVSPVQFWRGDLIETISNALGETRIDASRLEIEITETAMMEYP
DLVSDKIVALKKLGIRIALDDFGTGYSSLSYLHRFAVDTLKVDRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTE
TDEQVDWLSALGPIQAQGFLFSRPVPADAIPALLARFGVCGAPEPRAMAETPPRALGGRTDAPGEGGND
>Mature_789_residues
MNSPRHLTAHARLSRGRKTRRRALFAIPLLGVIALALLWAVIVMRLAVEKDSAYREAAASAAILSTALEQHTVKAIHQVD
QITRFVKYEFEKSPDHFNLASTVEKGVVPSDTLIQVSILDAKGRLVANTSEQHPKPLDFSDREHFQVHASHNDDELYISR
PVLGRVSRQWTLQMTRRLNTPDGKFAGVVVVSEDPSYFTSDFYNNAAIGKDGVIAVISDTGAVLARRTGSSASAAGAFSA
SGVYPIAERVSGTYADPIDGTQRIVSYRHLDGYPLGVLVGLSQAEEMSDYHHTRNIYLLMTSFITLAMLAFFGVATGLIG
KLLGREREMTHLAEYDLLTGLANRYTTLRALRNEVAQPSSLKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDA
VADQGTLARIGGDEFVVVVKGDGAEARAVRLAESVIRMFGKPFDVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMY
SAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEALVRWDHPEHGVIAASEFISI
AESTGLIVPIGDYVVRTACQQLARWQEEGHDTLTLAVNVSPVQFWRGDLIETISNALGETRIDASRLEIEITETAMMEYP
DLVSDKIVALKKLGIRIALDDFGTGYSSLSYLHRFAVDTLKVDRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTE
TDEQVDWLSALGPIQAQGFLFSRPVPADAIPALLARFGVCGAPEPRAMAETPPRALGGRTDAPGEGGND

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=34.7417840375587, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=546, Percent_Identity=29.8534798534799, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI226510982, Length=485, Percent_Identity=28.2474226804124, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1787055, Length=429, Percent_Identity=26.8065268065268, Blast_Score=153, Evalue=5e-38,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=33.8912133891213, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=33.1967213114754, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1786507, Length=224, Percent_Identity=36.1607142857143, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=33.4728033472803, Blast_Score=137, Evalue=4e-33,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=32.9365079365079, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=30.4166666666667, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=30.8943089430894, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788381, Length=415, Percent_Identity=25.7831325301205, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=34.1463414634146, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1786584, Length=198, Percent_Identity=31.8181818181818, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=28.8135593220339, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=232, Percent_Identity=28.0172413793103, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081977, Length=200, Percent_Identity=31.5, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=31.6770186335404, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787410, Length=235, Percent_Identity=24.2553191489362, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787262, Length=193, Percent_Identity=26.4248704663212, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86223; Mature: 86223

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPRHLTAHARLSRGRKTRRRALFAIPLLGVIALALLWAVIVMRLAVEKDSAYREAAAS
CCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPDHFNLASTVEKGVVPSDTLIQVSILD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEEEEEC
AKGRLVANTSEQHPKPLDFSDREHFQVHASHNDDELYISRPVLGRVSRQWTLQMTRRLNT
CCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
PDGKFAGVVVVSEDPSYFTSDFYNNAAIGKDGVIAVISDTGAVLARRTGSSASAAGAFSA
CCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCC
SGVYPIAERVSGTYADPIDGTQRIVSYRHLDGYPLGVLVGLSQAEEMSDYHHTRNIYLLM
CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHEEECHHHHHHHHHHHHCHHHHHH
TSFITLAMLAFFGVATGLIGKLLGREREMTHLAEYDLLTGLANRYTTLRALRNEVAQPSS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVADQGTLARIGGDEFVVVVK
CCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEEEEE
GDGAEARAVRLAESVIRMFGKPFDVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMY
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHE
SAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEA
ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
LVRWDHPEHGVIAASEFISIAESTGLIVPIGDYVVRTACQQLARWQEEGHDTLTLAVNVS
HHCCCCCCCCEEEHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
PVQFWRGDLIETISNALGETRIDASRLEIEITETAMMEYPDLVSDKIVALKKLGIRIALD
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLSYLHRFAVDTLKVDRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
TDEQVDWLSALGPIQAQGFLFSRPVPADAIPALLARFGVCGAPEPRAMAETPPRALGGRT
CCHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCC
DAPGEGGND
CCCCCCCCC
>Mature Secondary Structure
MNSPRHLTAHARLSRGRKTRRRALFAIPLLGVIALALLWAVIVMRLAVEKDSAYREAAAS
CCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPDHFNLASTVEKGVVPSDTLIQVSILD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEEEEEC
AKGRLVANTSEQHPKPLDFSDREHFQVHASHNDDELYISRPVLGRVSRQWTLQMTRRLNT
CCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
PDGKFAGVVVVSEDPSYFTSDFYNNAAIGKDGVIAVISDTGAVLARRTGSSASAAGAFSA
CCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCC
SGVYPIAERVSGTYADPIDGTQRIVSYRHLDGYPLGVLVGLSQAEEMSDYHHTRNIYLLM
CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHEEECHHHHHHHHHHHHCHHHHHH
TSFITLAMLAFFGVATGLIGKLLGREREMTHLAEYDLLTGLANRYTTLRALRNEVAQPSS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVADQGTLARIGGDEFVVVVK
CCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEEEEE
GDGAEARAVRLAESVIRMFGKPFDVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMY
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHE
SAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEA
ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
LVRWDHPEHGVIAASEFISIAESTGLIVPIGDYVVRTACQQLARWQEEGHDTLTLAVNVS
HHCCCCCCCCEEEHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
PVQFWRGDLIETISNALGETRIDASRLEIEITETAMMEYPDLVSDKIVALKKLGIRIALD
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLSYLHRFAVDTLKVDRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
TDEQVDWLSALGPIQAQGFLFSRPVPADAIPALLARFGVCGAPEPRAMAETPPRALGGRT
CCHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCC
DAPGEGGND
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]