Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028234
Identifier: 238028234
GI number: 238028234
Start: 3059242
End: 3059700
Strand: Direct
Name: 238028234
Synonym: bglu_1g26870
Alternate gene names: NA
Gene position: 3059242-3059700 (Clockwise)
Preceding gene: 238028233
Following gene: 238028235
Centisome position: 78.31
GC content: 66.01
Gene sequence:
>459_bases ATGGCAAACGTCTACGACAAACTGAAGGCACTCGGCATCGAACTCCCGAGCGCGGGCGCACCGGCGGCGGCCTACGTGAT GAGCGCGCAGAGCGGCAATACCGTCTACCTGTCCGGCCACATCGCGAAGCGGGACGGCAAGGTGTGGGTCGGCAAGCTCG GCGCCGATCTGTCCACCGACGACGGCAAGCTCGCGGCGCGCAACGTCGCGATCGACCTGCTCGCCACGCTGCACACGCAT ACCGGCGACCTGAACAAGGTCAAGCGCATCGTCAAGCTGATGAGCCTCGTCAATTCGACGCTCGAGTTCACCGAGCAGCA CCTCGTCACCAACGGCGCCTCCGAGCTGATCGCCGAGGTGTTCGGCGAGGCCGGCAAGCACGCGCGCTCGGCGTTCGGCG TCGCGCAGATCCCGCTTGGCGCCTGCGTCGAGATCGAGCTGATCGCGGAAGTCGAATGA
Upstream 100 bases:
>100_bases GCGCGCCTCGGCCAGCTGCTGCGCGAGCGCGTCTGATGCGGCGCGCCGGGCCTCGCCCCGGCGCGCACCGATTGTTCCCT ACCACGAGGAAATACCACTG
Downstream 100 bases:
>100_bases CGGCCCGGCGCGTTCGCTTCAAGCAGGTCGACGTCTTCACGGCGGTGCCGATGCGCGGCAATCCGCTCGCGGTGATCTTC GACGCGGACGGCCTGGCCGA
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-PSP Family Protein; Endoribonuclease L-Psp; Endoribonuclease; Transcriptional Regulator; Translation Initiation Inhibitor YjgF Family; Transcription Regulator; Endoribonuclease L-PSP Superfamily; Translation Initiation Inhibitor Protein; Endoribonuclease Family Protein; L-PSP Family Endoribonuclease; Endoribonuclease L-PSP Family; Translation Initiation Inhibitor Protein YjgF Family; 2-Aminomuconate Deaminase; YjgF-Family Protein; Peptidase C; Creatininase; Translation Initiation Inhibitor YjgF; YjgF Family Translation Initiation Inhibitor; Endoribonuclease-L-PSP Family Protein
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MANVYDKLKALGIELPSAGAPAAAYVMSAQSGNTVYLSGHIAKRDGKVWVGKLGADLSTDDGKLAARNVAIDLLATLHTH TGDLNKVKRIVKLMSLVNSTLEFTEQHLVTNGASELIAEVFGEAGKHARSAFGVAQIPLGACVEIELIAEVE
Sequences:
>Translated_152_residues MANVYDKLKALGIELPSAGAPAAAYVMSAQSGNTVYLSGHIAKRDGKVWVGKLGADLSTDDGKLAARNVAIDLLATLHTH TGDLNKVKRIVKLMSLVNSTLEFTEQHLVTNGASELIAEVFGEAGKHARSAFGVAQIPLGACVEIELIAEVE >Mature_151_residues ANVYDKLKALGIELPSAGAPAAAYVMSAQSGNTVYLSGHIAKRDGKVWVGKLGADLSTDDGKLAARNVAIDLLATLHTHT GDLNKVKRIVKLMSLVNSTLEFTEQHLVTNGASELIAEVFGEAGKHARSAFGVAQIPLGACVEIELIAEVE
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15967; Mature: 15835
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVYDKLKALGIELPSAGAPAAAYVMSAQSGNTVYLSGHIAKRDGKVWVGKLGADLSTD CCCHHHHHHHHCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCCC DGKLAARNVAIDLLATLHTHTGDLNKVKRIVKLMSLVNSTLEFTEQHLVTNGASELIAEV CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FGEAGKHARSAFGVAQIPLGACVEIELIAEVE HHHHCHHHHHHCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure ANVYDKLKALGIELPSAGAPAAAYVMSAQSGNTVYLSGHIAKRDGKVWVGKLGADLSTD CCHHHHHHHHCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCCC DGKLAARNVAIDLLATLHTHTGDLNKVKRIVKLMSLVNSTLEFTEQHLVTNGASELIAEV CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FGEAGKHARSAFGVAQIPLGACVEIELIAEVE HHHHCHHHHHHCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA