Click here to switch to the map view.

The map label for this gene is ybdL [H]

Identifier: 238028117

GI number: 238028117

Start: 2931368

End: 2932552

Strand: Direct

Name: ybdL [H]

Synonym: bglu_1g25680

Alternate gene names: 238028117

Gene position: 2931368-2932552 (Clockwise)

Preceding gene: 238028116

Following gene: 238028119

Centisome position: 75.04

GC content: 67.09

Gene sequence:

>1185_bases
ATGAACGCACCGTCCGCCATGCCAGCCACCCTGCCCGCCACGCCCGCCGTCGTTTCCCGCCTGCCGCAGGTCGGCACCAC
CATCTTCACGGTGATGAGCGCGCTCGCCGCCGAAAAGGGTGCGGTGAATCTCGGCCAGGGCTTCCCCGATTTCGACTGCG
ATCCGGCGATCATCGATGCCGTCGCCAACGCGATGCGCGAGGGGCACAACCAGTATCCGCCGATGACGGGCGCCGCGCCG
CTGCGCGAAGCGATCGCGGCAAAGATCGAGCGGATCTACGGGCGCCGCTACGACGCGGCGGGCGAGATCACGGTTACGGC
CGGCGCGACGCAGGCGCTGCTGACGGCGATCCTCTGCGCCGTGCATCCGGGCGACGAGGTGATCGTGGTCGAGCCCACCT
ATGACAGCTACCTGCCGTCGATCGAGCTGGCGGGCGGCAAGCCCGTGTTCGTCACGCTGGAGGCACCCGACTATGCGATT
CCGTTCGACCGGCTCGCGGCCGCGATCACGCCCAGGACCCGCCTGCTGCTGATCAACACGCCGCACAATCCGACCGGCAC
GGTCTGGCGCGAGGCCGACATGCGCCGGCTGGAGGAGATCGTGCGCGGCACCAAGGTGCTGATCCTCTCCGACGAGGTGT
ACGAGCACATGGTGTACGACGGCGAGCGGCACGAAAGCGTGGCGCACTATCCGGAGCTGGCGGCACGCAGCTTCATCGTA
TCGAGCTTCGGCAAGACCTACCACGTGACGGGCTGGAAGGTAGGCTATGTGGCGGCACCGGCCTCGCTGACGGCCGAGTT
CCGCAAGGTCCACCAGTTCAACGTGTTCACCGTCAACACGCCGATGCAGGTGGGGCTTGCGAATTACCTGCTCGATCCGC
AGCCGTATCTGACGCTGCCCGCGTTCTATCAGCGCAAGCGCGACCTGTTCCGCGAGGGGCTAGCCGCGACGCGCTTCAAG
CTGCTGCCGTGTGCGGGCACCTACTTCCAATGCGTCGATTATTCGGCGATCAGCGACCTGCCCGAAGCCGAATTCGCGAA
ATGGCTGACGGCCGAGATCGGCGTCGCCGCAATCCCCGTCTCGGCGTTCTATCACGAGCCGCGCGAGTCGGGCGTGGTGC
GCTTTTGCTTCGCGAAGCGCGAAGCCACGCTCGCCACCGCGCTCGAACGGCTGGCGCGGCTGTAG

Upstream 100 bases:

>100_bases
CGCCGTTCGTCGCCGCCTGCGGCCTGGCGGCGGCCGAACCTGCGCCGGCCTGAGCCGCACCGCCCGGCAGCGCCCGCCCC
CACTCCACCGCCGAGACACG

Downstream 100 bases:

>100_bases
GCACGCGCCGCCGGGGGCCGCGGCACGTCAGCGCTTCACGCCGTTGGCCTCGATGTGCGCCTTGCGGTCGGCCGTCACGC
GCTGCGCGGCGGGCCGCTCG

Product: methionine aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNAPSAMPATLPATPAVVSRLPQVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPAIIDAVANAMREGHNQYPPMTGAAP
LREAIAAKIERIYGRRYDAAGEITVTAGATQALLTAILCAVHPGDEVIVVEPTYDSYLPSIELAGGKPVFVTLEAPDYAI
PFDRLAAAITPRTRLLLINTPHNPTGTVWREADMRRLEEIVRGTKVLILSDEVYEHMVYDGERHESVAHYPELAARSFIV
SSFGKTYHVTGWKVGYVAAPASLTAEFRKVHQFNVFTVNTPMQVGLANYLLDPQPYLTLPAFYQRKRDLFREGLAATRFK
LLPCAGTYFQCVDYSAISDLPEAEFAKWLTAEIGVAAIPVSAFYHEPRESGVVRFCFAKREATLATALERLARL

Sequences:

>Translated_394_residues
MNAPSAMPATLPATPAVVSRLPQVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPAIIDAVANAMREGHNQYPPMTGAAP
LREAIAAKIERIYGRRYDAAGEITVTAGATQALLTAILCAVHPGDEVIVVEPTYDSYLPSIELAGGKPVFVTLEAPDYAI
PFDRLAAAITPRTRLLLINTPHNPTGTVWREADMRRLEEIVRGTKVLILSDEVYEHMVYDGERHESVAHYPELAARSFIV
SSFGKTYHVTGWKVGYVAAPASLTAEFRKVHQFNVFTVNTPMQVGLANYLLDPQPYLTLPAFYQRKRDLFREGLAATRFK
LLPCAGTYFQCVDYSAISDLPEAEFAKWLTAEIGVAAIPVSAFYHEPRESGVVRFCFAKREATLATALERLARL
>Mature_394_residues
MNAPSAMPATLPATPAVVSRLPQVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPAIIDAVANAMREGHNQYPPMTGAAP
LREAIAAKIERIYGRRYDAAGEITVTAGATQALLTAILCAVHPGDEVIVVEPTYDSYLPSIELAGGKPVFVTLEAPDYAI
PFDRLAAAITPRTRLLLINTPHNPTGTVWREADMRRLEEIVRGTKVLILSDEVYEHMVYDGERHESVAHYPELAARSFIV
SSFGKTYHVTGWKVGYVAAPASLTAEFRKVHQFNVFTVNTPMQVGLANYLLDPQPYLTLPAFYQRKRDLFREGLAATRFK
LLPCAGTYFQCVDYSAISDLPEAEFAKWLTAEIGVAAIPVSAFYHEPRESGVVRFCFAKREATLATALERLARL

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=409, Percent_Identity=35.2078239608802, Blast_Score=231, Evalue=6e-61,
Organism=Homo sapiens, GI169881279, Length=409, Percent_Identity=35.2078239608802, Blast_Score=231, Evalue=6e-61,
Organism=Homo sapiens, GI56713254, Length=401, Percent_Identity=32.9177057356608, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI56713256, Length=401, Percent_Identity=32.9177057356608, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI169881281, Length=407, Percent_Identity=31.2039312039312, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI4507369, Length=217, Percent_Identity=27.1889400921659, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1786816, Length=377, Percent_Identity=52.5198938992042, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1788722, Length=354, Percent_Identity=25.4237288135593, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788627, Length=221, Percent_Identity=30.316742081448, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787710, Length=315, Percent_Identity=27.3015873015873, Blast_Score=78, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71994472, Length=416, Percent_Identity=34.1346153846154, Blast_Score=226, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI71994476, Length=416, Percent_Identity=34.1346153846154, Blast_Score=226, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17567369, Length=401, Percent_Identity=30.6733167082294, Blast_Score=194, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI17567663, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=387, Percent_Identity=33.0749354005168, Blast_Score=185, Evalue=1e-47,
Organism=Drosophila melanogaster, GI28573069, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24646114, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI28573067, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI28573065, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI18859735, Length=207, Percent_Identity=29.951690821256, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 43123; Mature: 43123

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPSAMPATLPATPAVVSRLPQVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPAIIDA
CCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
VANAMREGHNQYPPMTGAAPLREAIAAKIERIYGRRYDAAGEITVTAGATQALLTAILCA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHH
VHPGDEVIVVEPTYDSYLPSIELAGGKPVFVTLEAPDYAIPFDRLAAAITPRTRLLLINT
CCCCCCEEEECCCHHHHCCCEEECCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
PHNPTGTVWREADMRRLEEIVRGTKVLILSDEVYEHMVYDGERHESVAHYPELAARSFIV
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SSFGKTYHVTGWKVGYVAAPASLTAEFRKVHQFNVFTVNTPMQVGLANYLLDPQPYLTLP
HHCCCEEEECCEEEEEEECCHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCCCCEECH
AFYQRKRDLFREGLAATRFKLLPCAGTYFQCVDYSAISDLPEAEFAKWLTAEIGVAAIPV
HHHHHHHHHHHHCHHHHHEEEEECCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCHHEEEH
SAFYHEPRESGVVRFCFAKREATLATALERLARL
HHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNAPSAMPATLPATPAVVSRLPQVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPAIIDA
CCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
VANAMREGHNQYPPMTGAAPLREAIAAKIERIYGRRYDAAGEITVTAGATQALLTAILCA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHH
VHPGDEVIVVEPTYDSYLPSIELAGGKPVFVTLEAPDYAIPFDRLAAAITPRTRLLLINT
CCCCCCEEEECCCHHHHCCCEEECCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
PHNPTGTVWREADMRRLEEIVRGTKVLILSDEVYEHMVYDGERHESVAHYPELAARSFIV
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SSFGKTYHVTGWKVGYVAAPASLTAEFRKVHQFNVFTVNTPMQVGLANYLLDPQPYLTLP
HHCCCEEEECCEEEEEEECCHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCCCCEECH
AFYQRKRDLFREGLAATRFKLLPCAGTYFQCVDYSAISDLPEAEFAKWLTAEIGVAAIPV
HHHHHHHHHHHHCHHHHHEEEEECCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCHHEEEH
SAFYHEPRESGVVRFCFAKREATLATALERLARL
HHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]