| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yhhW [C]
Identifier: 238028096
GI number: 238028096
Start: 2906163
End: 2907035
Strand: Direct
Name: yhhW [C]
Synonym: bglu_1g25470
Alternate gene names: 238028096
Gene position: 2906163-2907035 (Clockwise)
Preceding gene: 238028094
Following gene: 238028097
Centisome position: 74.39
GC content: 69.42
Gene sequence:
>873_bases ATGCCAGAACCGCGCTCGATCCAGCGCGTCTATCCGTCCCTGCGGGCCACGGAAGGCGCCGGTTTCCAGGTCCACCGCCC ATTCCCCACCCGCCTGCTCGCCGATTTCGATCCGTTCCTGCTGCTCGACGAGATGGGACCGGTGGAATACGCACCCGGCG CGGCGAAGGGCGCGCCCGATCATCCGCACCGCGGCTTCGAAACCGTCACCTATCTGCTCGATGGTCACGTTCGCCATCGC GATTCGGCGGGGCACACGGGCGAGTTGCGCGCGGGCGACGTGCAGTGGATGACCGCCGGCGCAGGGCTGATCCACAGCGA GATGCCCGACCCGGCGTTCGCGGCCGCGGGCGGCCGCATTCACGGTATCCAGCTCTGGGTCAATCTGCGCCGCAGCGACA AGCGGCTCGCGCCACGCTATCAGGAGCTCGCTGCAGCGGACATCCCACGTGCGTACTCGGCCGACGGCCGCATCGGCGTG AAGGTGATCGCCGGCGAGGCGCTCGGCGCGCGCGCGGCGATCGAGACGCAAACGCCGCTGCTGTATCTGCACCTGACTCT GCAGCCTCGCGCGCGCATCGGTCTGCCGGTGCCGCGCGATCACCGCGTGTTCGCCTACCCGATCGCCGGCGCGGGCCATT ACGGCGCGAGCCGCCAGGTAAGCGGCCCGCGACAGATGATCGTGTTCAACGACGATGGCGACACCGTCGAGCTCGCAGCC GGCGAGGCACCGCTCGACGTGCTGCTGCTCGGTGGTCGCCCGATCAGCGAGCCCATCGTCCGCTACGGGCCGTTCGTGAT GAACACCGAGCAGGAGATTCGCGACGCGGTGGCCGACTACCAAGCCGGCAGAATGGGCGCGATCCAGGGCTGA
Upstream 100 bases:
>100_bases ATTCCAGAACGATCCATTGCGGATCGCGCCGATTTCAAGCGCTGGCTGGTCCATATAATAGCTGCGACCAGCCAGCTCGA TCATTTCAGGACAATATCCG
Downstream 100 bases:
>100_bases GCCGCGCCGGACGAGGTTTGCGAATTGCGTCACAATGGTTCCTGTTGCGGCTTGCGGCCGCGTCGACAGAAGGAACCCGT ACCCTTGAATTTTGAACACC
Product: Pirin-like protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein PA2418 [H]
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MPEPRSIQRVYPSLRATEGAGFQVHRPFPTRLLADFDPFLLLDEMGPVEYAPGAAKGAPDHPHRGFETVTYLLDGHVRHR DSAGHTGELRAGDVQWMTAGAGLIHSEMPDPAFAAAGGRIHGIQLWVNLRRSDKRLAPRYQELAAADIPRAYSADGRIGV KVIAGEALGARAAIETQTPLLYLHLTLQPRARIGLPVPRDHRVFAYPIAGAGHYGASRQVSGPRQMIVFNDDGDTVELAA GEAPLDVLLLGGRPISEPIVRYGPFVMNTEQEIRDAVADYQAGRMGAIQG
Sequences:
>Translated_290_residues MPEPRSIQRVYPSLRATEGAGFQVHRPFPTRLLADFDPFLLLDEMGPVEYAPGAAKGAPDHPHRGFETVTYLLDGHVRHR DSAGHTGELRAGDVQWMTAGAGLIHSEMPDPAFAAAGGRIHGIQLWVNLRRSDKRLAPRYQELAAADIPRAYSADGRIGV KVIAGEALGARAAIETQTPLLYLHLTLQPRARIGLPVPRDHRVFAYPIAGAGHYGASRQVSGPRQMIVFNDDGDTVELAA GEAPLDVLLLGGRPISEPIVRYGPFVMNTEQEIRDAVADYQAGRMGAIQG >Mature_289_residues PEPRSIQRVYPSLRATEGAGFQVHRPFPTRLLADFDPFLLLDEMGPVEYAPGAAKGAPDHPHRGFETVTYLLDGHVRHRD SAGHTGELRAGDVQWMTAGAGLIHSEMPDPAFAAAGGRIHGIQLWVNLRRSDKRLAPRYQELAAADIPRAYSADGRIGVK VIAGEALGARAAIETQTPLLYLHLTLQPRARIGLPVPRDHRVFAYPIAGAGHYGASRQVSGPRQMIVFNDDGDTVELAAG EAPLDVLLLGGRPISEPIVRYGPFVMNTEQEIRDAVADYQAGRMGAIQG
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=278, Percent_Identity=42.8057553956835, Blast_Score=214, Evalue=7e-56, Organism=Homo sapiens, GI4505823, Length=278, Percent_Identity=42.8057553956835, Blast_Score=214, Evalue=7e-56, Organism=Escherichia coli, GI1789847, Length=89, Percent_Identity=37.0786516853933, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 31441; Mature: 31310
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPRSIQRVYPSLRATEGAGFQVHRPFPTRLLADFDPFLLLDEMGPVEYAPGAAKGAPD CCCCCCHHHHCCHHCCCCCCCEEEECCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTYLLDGHVRHRDSAGHTGELRAGDVQWMTAGAGLIHSEMPDPAFAAAGGRI CCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHCCCEE HGIQLWVNLRRSDKRLAPRYQELAAADIPRAYSADGRIGVKVIAGEALGARAAIETQTPL EEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCE LYLHLTLQPRARIGLPVPRDHRVFAYPIAGAGHYGASRQVSGPRQMIVFNDDGDTVELAA EEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC GEAPLDVLLLGGRPISEPIVRYGPFVMNTEQEIRDAVADYQAGRMGAIQG CCCCEEEEEECCCCCCCHHHHHCCEEECCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PEPRSIQRVYPSLRATEGAGFQVHRPFPTRLLADFDPFLLLDEMGPVEYAPGAAKGAPD CCCCCHHHHCCHHCCCCCCCEEEECCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTYLLDGHVRHRDSAGHTGELRAGDVQWMTAGAGLIHSEMPDPAFAAAGGRI CCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHCCCEE HGIQLWVNLRRSDKRLAPRYQELAAADIPRAYSADGRIGVKVIAGEALGARAAIETQTPL EEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCE LYLHLTLQPRARIGLPVPRDHRVFAYPIAGAGHYGASRQVSGPRQMIVFNDDGDTVELAA EEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC GEAPLDVLLLGGRPISEPIVRYGPFVMNTEQEIRDAVADYQAGRMGAIQG CCCCEEEEEECCCCCCCHHHHHCCEEECCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]