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The map label for this gene is yfeR [H]

Identifier: 238027590

GI number: 238027590

Start: 2202158

End: 2203060

Strand: Reverse

Name: yfeR [H]

Synonym: bglu_1g20080

Alternate gene names: 238027590

Gene position: 2203060-2202158 (Counterclockwise)

Preceding gene: 238027593

Following gene: 238027589

Centisome position: 56.39

GC content: 71.54

Gene sequence:

>903_bases
ATGAATATCACCCTGCGCCAGCTGAGGGTGTTCATCGCGGTTGCGCGTCTGCGCAGCTTCAGCCGGGCCGGTGACGAGAT
CGGCCTTACGCAGTCTGCGGTCAGCCGCTGCGTGCGTGAGCTCGAGGGCGAGATCGGCCTGAAGCTGATCGACCGCACCA
CGCGCGACGTGCAACTGACCGATGCGGGGACGAATCTGGTCGCCAGCGTCTCGCGGCTGCTCGGCGACCTGGACGACGCG
CTGCGCGAAATCCGCGAGATCGGCGAGCAGCGGCGCGGGCGCGTGCTGGTCGCCGCCAGCCCGACCGTCGCCTGCCGGCT
GATGCCGCGCGTGGTCGCGGCGGCCGAGCGGCAGTTTCCCTTTGTCACGCTTGGGCTGCGCGACGACGTGCAGAGCGACG
TGCTGCGCAAGGTGAAGTCGGGCGAGGTCGATTTCGGCGTGGTGATCGGCCCGCTCGCGGCAACCGAGCTGGTCTGCGAG
CCGCTGATGACCGACTCGTTCTGCCTGATCGCGCGCGCCGATCACGCGCTCGCCGCGCACGCCAGCGTGCCGTGGAGCGC
GCTCGAAGGCGAGCGCCTGGTGCTGCTCGATTACGCGTCGGGTAGCCGGCCGCTGATCGACGCGGCGCTGGCGCTGCATC
GGATCGGTGCATCGGTCGTGCAGGAACTCGGCCATTCGGCGACCGTGTTCGGGCTGGTCGAGGCGGGCGTGGGCGTCAGC
GTGCTGCCCTGGCTGTCCCTGCCGCTGCCGGCCGGCTCGTCGCTGGTGGCGCGGCCGCTGACGCCGCGCGCGGAACGCAC
GGTCGAGCTGATCCGACGCCGCGACCGCTCGCTGTCGCCGGCGGCCGAGGCGGTCTGGGGGCTCATGCATGGCATGCCGG
CGCGCGCCGAGGATCTCGACTGA

Upstream 100 bases:

>100_bases
CGTGAGCGCGGTTGCTGCACCGCACCGATTCATCGCGAATGCGACGGGAAGGCAAGCCCTACAATCTCGCATCGAAGCAT
GAGATTGATGAGGGCATTCA

Downstream 100 bases:

>100_bases
TACGGCGGCGCGGCGCTCGGGGCCGGACCGGCCGCTCGGTATCGGTTGCGCGGCGCTGTGTCGTCGTCCGGGCCGCTACA
CTGACGGGTATGGACCAACC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNITLRQLRVFIAVARLRSFSRAGDEIGLTQSAVSRCVRELEGEIGLKLIDRTTRDVQLTDAGTNLVASVSRLLGDLDDA
LREIREIGEQRRGRVLVAASPTVACRLMPRVVAAAERQFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLAATELVCE
PLMTDSFCLIARADHALAAHASVPWSALEGERLVLLDYASGSRPLIDAALALHRIGASVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELIRRRDRSLSPAAEAVWGLMHGMPARAEDLD

Sequences:

>Translated_300_residues
MNITLRQLRVFIAVARLRSFSRAGDEIGLTQSAVSRCVRELEGEIGLKLIDRTTRDVQLTDAGTNLVASVSRLLGDLDDA
LREIREIGEQRRGRVLVAASPTVACRLMPRVVAAAERQFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLAATELVCE
PLMTDSFCLIARADHALAAHASVPWSALEGERLVLLDYASGSRPLIDAALALHRIGASVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELIRRRDRSLSPAAEAVWGLMHGMPARAEDLD
>Mature_300_residues
MNITLRQLRVFIAVARLRSFSRAGDEIGLTQSAVSRCVRELEGEIGLKLIDRTTRDVQLTDAGTNLVASVSRLLGDLDDA
LREIREIGEQRRGRVLVAASPTVACRLMPRVVAAAERQFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLAATELVCE
PLMTDSFCLIARADHALAAHASVPWSALEGERLVLLDYASGSRPLIDAALALHRIGASVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLTPRAERTVELIRRRDRSLSPAAEAVWGLMHGMPARAEDLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=286, Percent_Identity=51.7482517482517, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=32.4137931034483, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI157672245, Length=279, Percent_Identity=30.8243727598566, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=32.3024054982818, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=32.8125, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=30, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788887, Length=281, Percent_Identity=25.2669039145907, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786401, Length=176, Percent_Identity=35.2272727272727, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788297, Length=290, Percent_Identity=25.8620689655172, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=302, Percent_Identity=28.476821192053, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367136, Length=239, Percent_Identity=25.9414225941423, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=27.5280898876405, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=31.0734463276836, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787128, Length=158, Percent_Identity=28.4810126582279, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789506, Length=253, Percent_Identity=24.5059288537549, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=169, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=23.4615384615385, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787589, Length=143, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=280, Percent_Identity=21.4285714285714, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=24.2798353909465, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=139, Percent_Identity=27.3381294964029, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081978, Length=180, Percent_Identity=28.3333333333333, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790011, Length=127, Percent_Identity=28.3464566929134, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32315; Mature: 32315

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITLRQLRVFIAVARLRSFSRAGDEIGLTQSAVSRCVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEE
DAGTNLVASVSRLLGDLDDALREIREIGEQRRGRVLVAASPTVACRLMPRVVAAAERQFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCC
FVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLAATELVCEPLMTDSFCLIARADHALAAH
EEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHC
ASVPWSALEGERLVLLDYASGSRPLIDAALALHRIGASVVQELGHSATVFGLVEAGVGVS
CCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLTPRAERTVELIRRRDRSLSPAAEAVWGLMHGMPARAEDLD
EHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNITLRQLRVFIAVARLRSFSRAGDEIGLTQSAVSRCVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEE
DAGTNLVASVSRLLGDLDDALREIREIGEQRRGRVLVAASPTVACRLMPRVVAAAERQFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCC
FVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLAATELVCEPLMTDSFCLIARADHALAAH
EEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHC
ASVPWSALEGERLVLLDYASGSRPLIDAALALHRIGASVVQELGHSATVFGLVEAGVGVS
CCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLTPRAERTVELIRRRDRSLSPAAEAVWGLMHGMPARAEDLD
EHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]