Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027557
Identifier: 238027557
GI number: 238027557
Start: 2160019
End: 2160873
Strand: Reverse
Name: 238027557
Synonym: bglu_1g19750
Alternate gene names: NA
Gene position: 2160873-2160019 (Counterclockwise)
Preceding gene: 238027558
Following gene: 238027556
Centisome position: 55.31
GC content: 72.28
Gene sequence:
>855_bases ATGAAACGATCGAAGGGACGCACCATGCTGGCCGGCCTGCTCGTCGCCGGGCTGGCGAGCGGCTGCTCGCTGTTCAAGGA TTCGAACTACGGGGTCGGCGCGCAGGCCGAGCGGGCCGCGATGATCCAGGCCGCGGCGGACAAGGTCGATCCGCCCGATA CGCCGGGCATGTACCTGGGCCTGATCGACCGCATGCAGCAGCAGGGGCTGTACTACGCCTCGCTCGCGCATATCGACGAG TACGAGAAGCAGTACGGCGCCTCCGCCGACACCCGGCTGCTGCGCGCCGACGCGCTGCGTGCCACCTCGCAGCTCGACGC GAGCGAGCAGGCCTACACGCAGCTGCTGAACACGCCGCTGGCGGCGCGCGGCTATCGCGGCCTCGGCCTGATCGCGGGCG CGCGCGGCGACTTCGCGCGTGCCGCGAAGCTGTTGGAGCAGGCCACGCTGCTCGCGCCGACCGACGCCGCGGCGCTCTCC GATCTCGCCTATGCACGCATGCGCGCTGGCGACCCCGGCGGCGCGCGCGTGCCGCTGATGAAGGCCGCCGAGCTCGATCA CCGCAACCCGCGCATCATGAGCAACCTCGCCCTGTTCCTGATGGCGAGCGGCCATCCGGAGAACGCGCAGGGCCTGATGG ACCAGCAGCACATGACGCCTCGGGTGCGTGCCGAGATTCGCGACGACGCGGCCCGTGTCACGGCCGCGCAGCGCGCTCGG CAGCTTACCGTGGTGCCGCCGGGGCCGGGCGACGCGGCGGGGCCGTCCGGCGCGCGCGCGGGCGGCGCGCCGATCGCGAG CAACGAGGGCTTCGACCTGGCCGCACCGCTGCTGCAGCGCTTCTCGCAAAAATGA
Upstream 100 bases:
>100_bases CTGATCGTGACGGCCGGCCCGGGCATCATGACCGTGGTGGTCGCGCTGGCGAACATGAAGCGCTGATGGCGGGCGATGCG ATGAAGAGGAGCGCGGCGGG
Downstream 100 bases:
>100_bases TTTACCACACGGAGCCGACGATGCGATATTCCCAATCCTGGCGGCCGCGCGCGCGTGCATGGCATACCGCGTGGGTTGCG CTGGCGGCCCTGGCCGGCGC
Product: TPR-repeat pilus assembly protein TadD
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Flp Pilus Assembly Protein; Flp Pilus Assembly Protein TadD; Lipoprotein; Lipoprotein Transmembrane; Tetratricopeptide Repeat Family; TPR Repeat Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Domain Protein; Tetratricopeptide TPR_2 Repeat-Containing Protein; Flp Pilus Assembly Protein TadD Contains TPRrepeats; Pilus Assembly Protein Tadd
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MKRSKGRTMLAGLLVAGLASGCSLFKDSNYGVGAQAERAAMIQAAADKVDPPDTPGMYLGLIDRMQQQGLYYASLAHIDE YEKQYGASADTRLLRADALRATSQLDASEQAYTQLLNTPLAARGYRGLGLIAGARGDFARAAKLLEQATLLAPTDAAALS DLAYARMRAGDPGGARVPLMKAAELDHRNPRIMSNLALFLMASGHPENAQGLMDQQHMTPRVRAEIRDDAARVTAAQRAR QLTVVPPGPGDAAGPSGARAGGAPIASNEGFDLAAPLLQRFSQK
Sequences:
>Translated_284_residues MKRSKGRTMLAGLLVAGLASGCSLFKDSNYGVGAQAERAAMIQAAADKVDPPDTPGMYLGLIDRMQQQGLYYASLAHIDE YEKQYGASADTRLLRADALRATSQLDASEQAYTQLLNTPLAARGYRGLGLIAGARGDFARAAKLLEQATLLAPTDAAALS DLAYARMRAGDPGGARVPLMKAAELDHRNPRIMSNLALFLMASGHPENAQGLMDQQHMTPRVRAEIRDDAARVTAAQRAR QLTVVPPGPGDAAGPSGARAGGAPIASNEGFDLAAPLLQRFSQK >Mature_284_residues MKRSKGRTMLAGLLVAGLASGCSLFKDSNYGVGAQAERAAMIQAAADKVDPPDTPGMYLGLIDRMQQQGLYYASLAHIDE YEKQYGASADTRLLRADALRATSQLDASEQAYTQLLNTPLAARGYRGLGLIAGARGDFARAAKLLEQATLLAPTDAAALS DLAYARMRAGDPGGARVPLMKAAELDHRNPRIMSNLALFLMASGHPENAQGLMDQQHMTPRVRAEIRDDAARVTAAQRAR QLTVVPPGPGDAAGPSGARAGGAPIASNEGFDLAAPLLQRFSQK
Specific function: Unknown
COG id: COG5010
COG function: function code U; Flp pilus assembly protein TadD, contains TPR repeats
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30000; Mature: 30000
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSKGRTMLAGLLVAGLASGCSLFKDSNYGVGAQAERAAMIQAAADKVDPPDTPGMYLG CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH LIDRMQQQGLYYASLAHIDEYEKQYGASADTRLLRADALRATSQLDASEQAYTQLLNTPL HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCH AARGYRGLGLIAGARGDFARAAKLLEQATLLAPTDAAALSDLAYARMRAGDPGGARVPLM HHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH KAAELDHRNPRIMSNLALFLMASGHPENAQGLMDQQHMTPRVRAEIRDDAARVTAAQRAR HHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC QLTVVPPGPGDAAGPSGARAGGAPIASNEGFDLAAPLLQRFSQK EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MKRSKGRTMLAGLLVAGLASGCSLFKDSNYGVGAQAERAAMIQAAADKVDPPDTPGMYLG CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH LIDRMQQQGLYYASLAHIDEYEKQYGASADTRLLRADALRATSQLDASEQAYTQLLNTPL HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCH AARGYRGLGLIAGARGDFARAAKLLEQATLLAPTDAAALSDLAYARMRAGDPGGARVPLM HHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH KAAELDHRNPRIMSNLALFLMASGHPENAQGLMDQQHMTPRVRAEIRDDAARVTAAQRAR HHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC QLTVVPPGPGDAAGPSGARAGGAPIASNEGFDLAAPLLQRFSQK EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA