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The map label for this gene is rbsC [H]

Identifier: 238027463

GI number: 238027463

Start: 2048289

End: 2049311

Strand: Reverse

Name: rbsC [H]

Synonym: bglu_1g18660

Alternate gene names: 238027463

Gene position: 2049311-2048289 (Counterclockwise)

Preceding gene: 238027464

Following gene: 339905967

Centisome position: 52.46

GC content: 66.96

Gene sequence:

>1023_bases
ATGAACGAACCGATTCTCCCCGGCCACGACACGGCCGGCAGCGCCGCGCCCGACGCGGCCGCGCCTTCCGCCAAGCGCCT
CTCGGGCACGCGGCTCGGGCTTTCCAACTATCTGGGCCTGGCCGGCGCGCTGCTTGCGATGATCGCGCTGTTCTCGGCGC
TCAGCTCGCATTTCCTCACGTATGACACGTTCAGTACGATCGCGAACCAGATTCCCGACCTGGTGGTGATGTCGGTCGGC
ATGACCTTCGTGCTGATCATCGCCGGCATCGATCTGTCGGTCGGCTCGGTGCTGGCGCTGGCCGCCTCGGTGGTCAGCGT
GGCGGCGCTGCAGTGGCACTGGGCGCCGCTGCCGGCCGCGCTGCTCGGCATGGCCGCGGCGGCGCTCGCCGGAACCGTGA
CCGGGGCCGTGACGGTGGGCTGGCGGATTCCGTCGTTCATCGTCTCGCTGGGCGTGCTGGAGGGCGCGCGCGGGCTGGCC
TACCAGCTGACCAATTCGCGCACCGCGTATATCGGCGATGCCTTCGATTTCCTGTCGAATCCGTTCGCACTGGGCATCTC
GCCGGCCTTCGCGATCGCGGTCGTGGTGATGCTGGTGGCGCAGTTCGTGCTTACCCGGACGGTGTTCGGCAGATACCTGG
TTGGTATCGGTACCAATGAAGAGGCCGTCAGGCTTGCGGGGGTGAACCCTCGTCCGTATAAAATCGTCGTGTTTGCGTTG
ATGGGCGCGCTGGCGGGGCTTGCGGCGCTGTTCCAGATCTCGCGGCTCGAGGCTGCCGACCCGAATGCGGGCGTCGGGCT
CGAACTGCAGGTGATCGCAGCCGTCGTGATCGGCGGTACGAGCCTGATGGGCGGGCGCGGCTCCGTGATCAGCACGTTTT
TCGGCGTCTTGATCATCTCGGTGCTGGCGGCGGGGCTGGCCCAGATCGGCGCGAACGAACCGACCAAGCGCATCATCACC
GGTGCCGTGATTGTCGTCGCCGTCGTACTGGACACGTATCGCAGCCGCCGGTCGCGCACTTAA

Upstream 100 bases:

>100_bases
CGCTGCTGGCCGCCGCGTTCGCCGGCTTCGCGCGCCGCGCCGCCACGCCCGCACCGACGCCGGCTGCGCCGGCAGATGAT
TCGACTCCAGGAATTCCTTC

Downstream 100 bases:

>100_bases
AGAGATAGAGCAGAGGGATTCAAAATGGCGACGATCAAGGATGTGGCTGCCATGGCGGGCGTGTCGTTCACCACGGTGTC
ACACGTGGTGAACAATTCGC

Product: Inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNEPILPGHDTAGSAAPDAAAPSAKRLSGTRLGLSNYLGLAGALLAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVG
MTFVLIIAGIDLSVGSVLALAASVVSVAALQWHWAPLPAALLGMAAAALAGTVTGAVTVGWRIPSFIVSLGVLEGARGLA
YQLTNSRTAYIGDAFDFLSNPFALGISPAFAIAVVVMLVAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKIVVFAL
MGALAGLAALFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIIT
GAVIVVAVVLDTYRSRRSRT

Sequences:

>Translated_340_residues
MNEPILPGHDTAGSAAPDAAAPSAKRLSGTRLGLSNYLGLAGALLAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVG
MTFVLIIAGIDLSVGSVLALAASVVSVAALQWHWAPLPAALLGMAAAALAGTVTGAVTVGWRIPSFIVSLGVLEGARGLA
YQLTNSRTAYIGDAFDFLSNPFALGISPAFAIAVVVMLVAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKIVVFAL
MGALAGLAALFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIIT
GAVIVVAVVLDTYRSRRSRT
>Mature_340_residues
MNEPILPGHDTAGSAAPDAAAPSAKRLSGTRLGLSNYLGLAGALLAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVG
MTFVLIIAGIDLSVGSVLALAASVVSVAALQWHWAPLPAALLGMAAAALAGTVTGAVTVGWRIPSFIVSLGVLEGARGLA
YQLTNSRTAYIGDAFDFLSNPFALGISPAFAIAVVVMLVAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKIVVFAL
MGALAGLAALFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIIT
GAVIVVAVVLDTYRSRRSRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=38.4105960264901, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=31.7901234567901, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1790524, Length=295, Percent_Identity=33.5593220338983, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789992, Length=384, Percent_Identity=31.25, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI145693152, Length=279, Percent_Identity=31.1827956989247, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=33.0677290836653, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=243, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=28.2685512367491, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=285, Percent_Identity=30.8771929824561, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787794, Length=310, Percent_Identity=25.1612903225806, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34849; Mature: 34849

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPILPGHDTAGSAAPDAAAPSAKRLSGTRLGLSNYLGLAGALLAMIALFSALSSHFLT
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDTFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALQWHWAPLPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
LLGMAAAALAGTVTGAVTVGWRIPSFIVSLGVLEGARGLAYQLTNSRTAYIGDAFDFLSN
HHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCEEEECCCCEEEECHHHHHHCC
PFALGISPAFAIAVVVMLVAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKIVVFAL
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHH
MGALAGLAALFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIIS
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VLAAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRSRT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNEPILPGHDTAGSAAPDAAAPSAKRLSGTRLGLSNYLGLAGALLAMIALFSALSSHFLT
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDTFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALQWHWAPLPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
LLGMAAAALAGTVTGAVTVGWRIPSFIVSLGVLEGARGLAYQLTNSRTAYIGDAFDFLSN
HHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCEEEECCCCEEEECHHHHHHCC
PFALGISPAFAIAVVVMLVAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKIVVFAL
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHH
MGALAGLAALFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIIS
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VLAAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRSRT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]