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The map label for this gene is csd [H]

Identifier: 238026978

GI number: 238026978

Start: 1488023

End: 1489222

Strand: Reverse

Name: csd [H]

Synonym: bglu_1g13550

Alternate gene names: 238026978

Gene position: 1489222-1488023 (Counterclockwise)

Preceding gene: 238026980

Following gene: 238026977

Centisome position: 38.12

GC content: 73.58

Gene sequence:

>1200_bases
ATGCCCCCCGCCCTGTCCCGCGCCACCATCGACGCGCTGCGCGCCGCCACGCCGGGCATCGCCCATACCACCCACTTCAA
CCACGGCGGAGCCTCACTGCCGTCGGCCCGCACGCTCGAGGCCGTGCAGACGCAGCTCGCGCGCGAAGCCACGCTGGGGC
CGATGGAAGCCGGCGCGGCCGGCGTCGAACAGAGCGAGCGCGCGCGCGGGCTCGCCGCCCGCCTGCTCAATGCGCGGCCC
GGCGAAATCGCGCTGACCACCAGCAGCACGCACGGCTGGGGCCTCGCGTTCGACGCGCTGGGCCCGTGGCGGTCCGGCGA
CCGGATTCTCGTCGCGCGACAGGAATGGGGCAGCAACGTCGCCACGCTGCGCCTCGCGGCGCAGCGCGACGGCGTGTCGA
TCGAGACGATTCCCTGCGACGCGACGGGCGCGGCCGACCCCGAGGCGCTGGCCGCGCTGATCGACGAGCGCGTGCGGCTG
ATCGTGCTGACCTGGATGCCGGCCAACGGCGGGCTGATCAATCCGGCCGCCGCGATCGGACGCATCGCGCGCCGCCACGG
GATTCCGTATTTCGTCGACGCGGCGCAGGCGGTCGGCCAGTTGCCGATCGACGTCGCCGAAGTGGGCGCCGACGTGCTGG
TCGGTACCGGCCGCAAGGCGCTGCGCGGGCCGCGCGGCACCGGCCTGCTCTACATCCGGCAGGATTTCCTGCCGCGCCTC
ACGCCGTCGTTCGTCGACGTCTGGTCCGCGCCGTTCGACGCCGACGGCTATCCGGTGCTGCGCCGCGACGCCGCGCGCTT
CGAGACCGGCGACACCGCCTACGCACTGCGCTGCGGCCTCGCGAACGCGCTCGACGAAGCGCTGGCGCTGGGCATCGAGG
TGATCCGCGCACGCATCGACGCCGTCGCCACCATGCTGCGCGAGCGGCTGGCGGCACTGCCCGGCGTGAAGGTGCTGGAC
CTCGGCGGCGAGCGCTCCGGGCTGGTGGCGTTCGACGTGGCCGGCATCGAACCGGCCGAGGTCCGGCGCCGGCTCGCGGC
CAGGCAGATTTCGATCGCCAGCAACGGGCTCGACTACACGCCGCTCGACATGGAGGCGCGCGGCCTGCGCGAAGTCGCGC
GCGCCTCGGTCAGCTATCTGACCACTGAAGAAGAGATCACCACGCTGCTGGCGGGACTCGACGCGATCCGGCGCGAGTGA

Upstream 100 bases:

>100_bases
CTCGACGCGCCGCCCGCCAGGCCACCGCGACCGCGGTGGCCGCCATCGCGCTCGCCACGCCCGCCCTACTCGAACCGAAC
GCCCCCCACAAGGAGCCTCC

Downstream 100 bases:

>100_bases
TGCGTTGGCGCCGCGCGGCATCGACATCGAAGGCAGCGATGACGGCGGCAACGGCGCGCTTCACGATAGTGCCGCGCCGG
TGTTAGCGTTAGGCTCTCGC

Product: putative class-V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MPPALSRATIDALRAATPGIAHTTHFNHGGASLPSARTLEAVQTQLAREATLGPMEAGAAGVEQSERARGLAARLLNARP
GEIALTTSSTHGWGLAFDALGPWRSGDRILVARQEWGSNVATLRLAAQRDGVSIETIPCDATGAADPEALAALIDERVRL
IVLTWMPANGGLINPAAAIGRIARRHGIPYFVDAAQAVGQLPIDVAEVGADVLVGTGRKALRGPRGTGLLYIRQDFLPRL
TPSFVDVWSAPFDADGYPVLRRDAARFETGDTAYALRCGLANALDEALALGIEVIRARIDAVATMLRERLAALPGVKVLD
LGGERSGLVAFDVAGIEPAEVRRRLAARQISIASNGLDYTPLDMEARGLREVARASVSYLTTEEEITTLLAGLDAIRRE

Sequences:

>Translated_399_residues
MPPALSRATIDALRAATPGIAHTTHFNHGGASLPSARTLEAVQTQLAREATLGPMEAGAAGVEQSERARGLAARLLNARP
GEIALTTSSTHGWGLAFDALGPWRSGDRILVARQEWGSNVATLRLAAQRDGVSIETIPCDATGAADPEALAALIDERVRL
IVLTWMPANGGLINPAAAIGRIARRHGIPYFVDAAQAVGQLPIDVAEVGADVLVGTGRKALRGPRGTGLLYIRQDFLPRL
TPSFVDVWSAPFDADGYPVLRRDAARFETGDTAYALRCGLANALDEALALGIEVIRARIDAVATMLRERLAALPGVKVLD
LGGERSGLVAFDVAGIEPAEVRRRLAARQISIASNGLDYTPLDMEARGLREVARASVSYLTTEEEITTLLAGLDAIRRE
>Mature_398_residues
PPALSRATIDALRAATPGIAHTTHFNHGGASLPSARTLEAVQTQLAREATLGPMEAGAAGVEQSERARGLAARLLNARPG
EIALTTSSTHGWGLAFDALGPWRSGDRILVARQEWGSNVATLRLAAQRDGVSIETIPCDATGAADPEALAALIDERVRLI
VLTWMPANGGLINPAAAIGRIARRHGIPYFVDAAQAVGQLPIDVAEVGADVLVGTGRKALRGPRGTGLLYIRQDFLPRLT
PSFVDVWSAPFDADGYPVLRRDAARFETGDTAYALRCGLANALDEALALGIEVIRARIDAVATMLRERLAALPGVKVLDL
GGERSGLVAFDVAGIEPAEVRRRLAARQISIASNGLDYTPLDMEARGLREVARASVSYLTTEEEITTLLAGLDAIRRE

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=170, Percent_Identity=31.1764705882353, Blast_Score=85, Evalue=9e-17,
Organism=Escherichia coli, GI1787970, Length=351, Percent_Identity=29.0598290598291, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI48994898, Length=175, Percent_Identity=31.4285714285714, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1789175, Length=336, Percent_Identity=28.2738095238095, Blast_Score=85, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI25143064, Length=174, Percent_Identity=30.4597701149425, Blast_Score=89, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319831, Length=179, Percent_Identity=29.608938547486, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI20129463, Length=178, Percent_Identity=29.2134831460674, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42260; Mature: 42129

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPALSRATIDALRAATPGIAHTTHFNHGGASLPSARTLEAVQTQLAREATLGPMEAGAA
CCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCC
GVEQSERARGLAARLLNARPGEIALTTSSTHGWGLAFDALGPWRSGDRILVARQEWGSNV
CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCCCCCCEEEEEEHHHCCCE
ATLRLAAQRDGVSIETIPCDATGAADPEALAALIDERVRLIVLTWMPANGGLINPAAAIG
EEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHH
RIARRHGIPYFVDAAQAVGQLPIDVAEVGADVLVGTGRKALRGPRGTGLLYIRQDFLPRL
HHHHHCCCCCEEHHHHHHCCCCCCHHHCCCCEEEECCHHHHCCCCCCCEEEEEHHHCCCC
TPSFVDVWSAPFDADGYPVLRRDAARFETGDTAYALRCGLANALDEALALGIEVIRARID
CHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVATMLRERLAALPGVKVLDLGGERSGLVAFDVAGIEPAEVRRRLAARQISIASNGLDYT
HHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
PLDMEARGLREVARASVSYLTTEEEITTLLAGLDAIRRE
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PPALSRATIDALRAATPGIAHTTHFNHGGASLPSARTLEAVQTQLAREATLGPMEAGAA
CCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCC
GVEQSERARGLAARLLNARPGEIALTTSSTHGWGLAFDALGPWRSGDRILVARQEWGSNV
CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCCCCCCEEEEEEHHHCCCE
ATLRLAAQRDGVSIETIPCDATGAADPEALAALIDERVRLIVLTWMPANGGLINPAAAIG
EEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHH
RIARRHGIPYFVDAAQAVGQLPIDVAEVGADVLVGTGRKALRGPRGTGLLYIRQDFLPRL
HHHHHCCCCCEEHHHHHHCCCCCCHHHCCCCEEEECCHHHHCCCCCCCEEEEEHHHCCCC
TPSFVDVWSAPFDADGYPVLRRDAARFETGDTAYALRCGLANALDEALALGIEVIRARID
CHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVATMLRERLAALPGVKVLDLGGERSGLVAFDVAGIEPAEVRRRLAARQISIASNGLDYT
HHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
PLDMEARGLREVARASVSYLTTEEEITTLLAGLDAIRRE
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]