| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026940
Identifier: 238026940
GI number: 238026940
Start: 1435890
End: 1436843
Strand: Direct
Name: 238026940
Synonym: bglu_1g13120
Alternate gene names: NA
Gene position: 1435890-1436843 (Clockwise)
Preceding gene: 238026939
Following gene: 238026941
Centisome position: 36.76
GC content: 68.55
Gene sequence:
>954_bases ATGTCCCACGATTCCCACTATCCGCGCGACCTGATCGGCTACGGCCGGCATCCGGTGCAGGCGAACTGGCCGGGCCGCGC GCGCGTCGCCGTGCAGTTCGTGCTCAATTACGAGGAGGGCGGCGAGAACTGCGTGCTGCACGGCGATCCGGCCTCCGAGC AGTTCCTGTCCGAGATCGTCGGCGCGGCGGCCTATCCGGCGCGCCACATGAGCATGGAGTCGATCTACGAATACGGCTCG CGCGCGGGCGTCTGGCGCATCCTGCGCGAGTTCGAGAGACGTGCGCTGCCGCTCACCGTATTCGGCGTCGGCATGGCGAT CGAGCGGCATCCCGAGCTCGCGCGCGCGTTCGTCGAGCTGGGCCACGAGATCGCCTGCCACGGCTGGCGCTGGATTCATT ATCAGGACGCCACTCCCGAGCGCGAGGCGGAGCACATGCGGCTCGGCATGGCGGCGATCGAGCGCGTCACGGGCGTGCGG CCGCTCGGCTGGTACACGGGGCGCGACAGCCCGAACACGCACCGGCTCGTGGCCGAATACGGCGGCTTCCTGTACGACTC CGACTACTACGGCGACGACCTGCCGTTCTGGATGGAGGTTCCCGTCACGGGCGGCGCGAGCGTGCCGCAGCTGATCGTGC CGTATACGCTCGACACCAACGACATGCGCTTCGCGACGCCGCAGGGCTTCAACACCGCCGATCATTTCTTCCAGTACCTG CGCGACGCGTTCGACGTGCTCTACGAGGAGGGCGACGAGGCGCCGAAGATGCTGTCGATCGGCATGCATTGCCGGCTGCT CGGCCGGCCGGGGCGATTCCGCGCGCTGCAGCGCTTCCTCGACCATATCGAGCGGCACGACCGCGTCTGGGTCACGCGCC GCGTCGACATCGCGCGCCACTGGCGCGAGCACCATCCGTATGCCAGCAGCCACCAAGGCGAAGGAGCGGCATGA
Upstream 100 bases:
>100_bases CAAGCCTCGCATCGGCGCCGCCCCGCGCGCCGCCTGCGTCACCGCCGCCGGCGGCGCCGATGCGAGCCCGATCGACACGG GTTTCTCTTCGTATCCAGCC
Downstream 100 bases:
>100_bases AGGCGATGCACTACACGTTGGCGGAACTGAACGGGATGGCGGCCGAGGCCTTCGTCGCCGCGCTGTCGGGCATCTTCGAG CATTCGCCGTGGGTCGCCGA
Product: putative xylanase/chitin deacetylase
Products: NA
Alternate protein names: Urate Catabolism Protein; Polysaccharide Deacetylase Family Protein; Chitin Deacetylase; Xylanase/Chitin Deacetylase; Chitooligosaccharide Deacetylase; Polysaccharide Deacetylase Domain Protein; Polysaccharide Deacetylase Family; Chitooligosaccharide Deacetylase Protein; Hydrolase; Polysaccharide Deacetylase Protein Pda4B; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Polysaccharide Deacetylase Domain-Containing Protein; Allantoinase; Uricase; Cyclic Imide Hydrolase; Deacetylase
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSHDSHYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGS RAGVWRILREFERRALPLTVFGVGMAIERHPELARAFVELGHEIACHGWRWIHYQDATPEREAEHMRLGMAAIERVTGVR PLGWYTGRDSPNTHRLVAEYGGFLYDSDYYGDDLPFWMEVPVTGGASVPQLIVPYTLDTNDMRFATPQGFNTADHFFQYL RDAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVTRRVDIARHWREHHPYASSHQGEGAA
Sequences:
>Translated_317_residues MSHDSHYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGS RAGVWRILREFERRALPLTVFGVGMAIERHPELARAFVELGHEIACHGWRWIHYQDATPEREAEHMRLGMAAIERVTGVR PLGWYTGRDSPNTHRLVAEYGGFLYDSDYYGDDLPFWMEVPVTGGASVPQLIVPYTLDTNDMRFATPQGFNTADHFFQYL RDAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVTRRVDIARHWREHHPYASSHQGEGAA >Mature_316_residues SHDSHYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSR AGVWRILREFERRALPLTVFGVGMAIERHPELARAFVELGHEIACHGWRWIHYQDATPEREAEHMRLGMAAIERVTGVRP LGWYTGRDSPNTHRLVAEYGGFLYDSDYYGDDLPFWMEVPVTGGASVPQLIVPYTLDTNDMRFATPQGFNTADHFFQYLR DAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVTRRVDIARHWREHHPYASSHQGEGAA
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36420; Mature: 36289
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHDSHYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIV CCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHH GAAAYPARHMSMESIYEYGSRAGVWRILREFERRALPLTVFGVGMAIERHPELARAFVEL HHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHHHHH GHEIACHGWRWIHYQDATPEREAEHMRLGMAAIERVTGVRPLGWYTGRDSPNTHRLVAEY CCCEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH GGFLYDSDYYGDDLPFWMEVPVTGGASVPQLIVPYTLDTNDMRFATPQGFNTADHFFQYL CCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHHHHH RDAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVTRRVDIARH HHHHHHHHHCCCCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH WREHHPYASSHQGEGAA HHHHCCCCCCCCCCCCC >Mature Secondary Structure SHDSHYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIV CCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHH GAAAYPARHMSMESIYEYGSRAGVWRILREFERRALPLTVFGVGMAIERHPELARAFVEL HHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHHHHH GHEIACHGWRWIHYQDATPEREAEHMRLGMAAIERVTGVRPLGWYTGRDSPNTHRLVAEY CCCEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH GGFLYDSDYYGDDLPFWMEVPVTGGASVPQLIVPYTLDTNDMRFATPQGFNTADHFFQYL CCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHHHHH RDAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVTRRVDIARH HHHHHHHHHCCCCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH WREHHPYASSHQGEGAA HHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA