| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yecE [H]
Identifier: 238026929
GI number: 238026929
Start: 1423604
End: 1424359
Strand: Direct
Name: yecE [H]
Synonym: bglu_1g13010
Alternate gene names: 238026929
Gene position: 1423604-1424359 (Clockwise)
Preceding gene: 238026928
Following gene: 238026930
Centisome position: 36.44
GC content: 64.42
Gene sequence:
>756_bases ATGACCGCAGGCCCGCCCGCCGAGAGTCGTTCCCGGCCCGGTCCGATATATGTCGGATCTGCCGGGTGGGCCCTGTCGTC ACGCGTCGCCGATTCATTCCCCACCGAAGGCAGTCACCTCGAGCGCTACGCACGCGTTTTCTCTGCGGTGGAGATCAATT CGTCGTTCTATCGTCCTCATCAACCAAAGACCTACGCGCGCTGGGCCGCGAGCGTACCCGAGGCATTCCGGTTCTCGGTC AAGATGCCACGCAGGATTTCCCATGAGCTGAGATTACGCGACGCCGATGCCGACGTGAGCGAATTCCTGGCCCAGATCGC GCCCTTGCAAGACAAGGCGGGATGCCTGTTGCTTCAACTGCCGCCCAGTCTGGCCTTGGACGAGGCCACGGCCCGGCGCT TCTTTTCGCTGCTGCGAAGCGCCACCGAAACGCCGATCGTCTGCGAACCGCGTCATGCGACATGGTTTGCCGAGGCGGGC GCGGCACTCATGAAACAGGCCGGAATCGGCTGCGTGCGGGCCGACCCGCCGCCCGTGGCCAGGGCCGCGCCGGTCGGCGA TCCGCATGTTTCCTATTTCCGCTTGCATGGTTCGCCGCAGATCTATCATTCGGCATACGACGCGCCGTTCATCGAAGCGC TGGCGGCGCAGCTGACCGAAGCCGGCCGCACCGGCGCCGAAGCATGGTGCATTTTCGACAATACCGCGCGCGGCGAGGCG ATTCCCAACGCACTGACGCTGATGGCTACGCTGTAA
Upstream 100 bases:
>100_bases TGTCGGCAGCGCCCGAGGCTCGCGGCACGGTCGGCGGACGGCGCGGCGCGTGCCGGGCCGACGGCATCGCGTCGATCCGG CCGGCCCGCTCCGAAGCCCC
Downstream 100 bases:
>100_bases AGGGCGGCTGGCAGGTACGCCTCGTCCGAGGCACGTGCCGCGGCGCCGCTTCCGCGCCTACCATCGCCGGTTCGGCCGAC GTGCGTTTCGCTTCGTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MTAGPPAESRSRPGPIYVGSAGWALSSRVADSFPTEGSHLERYARVFSAVEINSSFYRPHQPKTYARWAASVPEAFRFSV KMPRRISHELRLRDADADVSEFLAQIAPLQDKAGCLLLQLPPSLALDEATARRFFSLLRSATETPIVCEPRHATWFAEAG AALMKQAGIGCVRADPPPVARAAPVGDPHVSYFRLHGSPQIYHSAYDAPFIEALAAQLTEAGRTGAEAWCIFDNTARGEA IPNALTLMATL
Sequences:
>Translated_251_residues MTAGPPAESRSRPGPIYVGSAGWALSSRVADSFPTEGSHLERYARVFSAVEINSSFYRPHQPKTYARWAASVPEAFRFSV KMPRRISHELRLRDADADVSEFLAQIAPLQDKAGCLLLQLPPSLALDEATARRFFSLLRSATETPIVCEPRHATWFAEAG AALMKQAGIGCVRADPPPVARAAPVGDPHVSYFRLHGSPQIYHSAYDAPFIEALAAQLTEAGRTGAEAWCIFDNTARGEA IPNALTLMATL >Mature_250_residues TAGPPAESRSRPGPIYVGSAGWALSSRVADSFPTEGSHLERYARVFSAVEINSSFYRPHQPKTYARWAASVPEAFRFSVK MPRRISHELRLRDADADVSEFLAQIAPLQDKAGCLLLQLPPSLALDEATARRFFSLLRSATETPIVCEPRHATWFAEAGA ALMKQAGIGCVRADPPPVARAAPVGDPHVSYFRLHGSPQIYHSAYDAPFIEALAAQLTEAGRTGAEAWCIFDNTARGEAI PNALTLMATL
Specific function: Unknown
COG id: COG1801
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0759 family [H]
Homologues:
Organism=Escherichia coli, GI1788175, Length=174, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002763 [H]
Pfam domain/function: PF01904 DUF72 [H]
EC number: NA
Molecular weight: Translated: 27261; Mature: 27130
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGPPAESRSRPGPIYVGSAGWALSSRVADSFPTEGSHLERYARVFSAVEINSSFYRPH CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC QPKTYARWAASVPEAFRFSVKMPRRISHELRLRDADADVSEFLAQIAPLQDKAGCLLLQL CCHHHHHHHHCCCHHHHEECCCCHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCEEEEEC PPSLALDEATARRFFSLLRSATETPIVCEPRHATWFAEAGAALMKQAGIGCVRADPPPVA CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC RAAPVGDPHVSYFRLHGSPQIYHSAYDAPFIEALAAQLTEAGRTGAEAWCIFDNTARGEA CCCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC IPNALTLMATL CCHHHHHEECC >Mature Secondary Structure TAGPPAESRSRPGPIYVGSAGWALSSRVADSFPTEGSHLERYARVFSAVEINSSFYRPH CCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC QPKTYARWAASVPEAFRFSVKMPRRISHELRLRDADADVSEFLAQIAPLQDKAGCLLLQL CCHHHHHHHHCCCHHHHEECCCCHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCEEEEEC PPSLALDEATARRFFSLLRSATETPIVCEPRHATWFAEAGAALMKQAGIGCVRADPPPVA CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC RAAPVGDPHVSYFRLHGSPQIYHSAYDAPFIEALAAQLTEAGRTGAEAWCIFDNTARGEA CCCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC IPNALTLMATL CCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]