| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is qmcA [H]
Identifier: 238026922
GI number: 238026922
Start: 1415664
End: 1416596
Strand: Direct
Name: qmcA [H]
Synonym: bglu_1g12930
Alternate gene names: 238026922
Gene position: 1415664-1416596 (Clockwise)
Preceding gene: 238026921
Following gene: 238026924
Centisome position: 36.24
GC content: 64.52
Gene sequence:
>933_bases ATGAATGCACTGATTTTCTGGGTGGTGCTGCTCGTCATCGTGTTCGTCGTGCTGTCGAAGACGGTGAAGATCGTCCCGCA GCAGCACGCCTGGGTGCTCGAACGCTTCGGGCGCTATCACGCGACGCTCTCGCCGGGGCTCAACGTGGTGCTGCCGTTCA TCGACCGGATCGCCTACCGCCACGTGCTCAAGGAAATCCCGCTCGACGTGCCGAGCCAGGTCTGCATCACGCGCGACAAC ACGCAGCTGCAGGTGGACGGCGTGCTGTATTTTCAGGTCACCGACCCGATGAAGGCCTCTTACGGCTCCAGCAACTTCGT GCTGGCGATCACGCAGCTCTCGCAGACCATGCTGCGCTCGGTGATCGGCAAGCTCGAACTCGACAAGACCTTCGAGGAGC GCGACTTCATCAACCACAGCATCGTGTCCGCGCTCGACGACGCCGCCTCGAACTGGGGCGTGAAGGTGCTGCGCTACGAG ATCAAGGATCTCACGCCGCCCAAGGAGATCCTGCACGCGATGCAGGCGCAAATCACTGCCGAGCGCGAGAAGCGCGCGCT GGTGGCGGCCTCGGAGGGGCGCCGGCAGGAGCAGATCAATCTCGCCTCGGGCGCGCGCGAGGCCGCGATCCAGAAGTCAG AGGGCGAGCGGCAGGCTGCCATCAACCAGGCGCAGGGCGAGGCCGCGGCGATCCTCGCGGTGGCCGAGGCCAACGCGCAG GCGATCCAGAAGATCGCGCAGGCGATCCAGTCGCAGGGCGGCATGGAGGCGGTGAACCTGAAGGTGGCCGAGCAGTATGT GAACGCGTTCGCGAATCTGGCCAAACAGGGCAATACGCTGATCGTGCCGTCGAATTTGTCAGACCTGAGCACGTCGATTG CTTCGGCGCTGACGATCGTCAATCGCGGCATGCCGGGCGCCGCGAAGGGCTGA
Upstream 100 bases:
>100_bases AAGTGCGCGCGATACGGGGAAACTGTCTGATCGTCGCCGCCAAGCCGCGGGGCTGAGCGCCCGGCGCGCGTCGATCCGTC AATCACAGGGGAGTTTTTTC
Downstream 100 bases:
>100_bases TGCGCGGCGCCGCCGGCGCTCGCCTTCAGGGAAACGGCCCGCGTGATGCGGGCCGTTTTCGTTGCGGGGGGCGTGATCGG CGTTGCCGCCCGAAGCACGC
Product: SPFH domain/band 7 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MNALIFWVVLLVIVFVVLSKTVKIVPQQHAWVLERFGRYHATLSPGLNVVLPFIDRIAYRHVLKEIPLDVPSQVCITRDN TQLQVDGVLYFQVTDPMKASYGSSNFVLAITQLSQTMLRSVIGKLELDKTFEERDFINHSIVSALDDAASNWGVKVLRYE IKDLTPPKEILHAMQAQITAEREKRALVAASEGRRQEQINLASGAREAAIQKSEGERQAAINQAQGEAAAILAVAEANAQ AIQKIAQAIQSQGGMEAVNLKVAEQYVNAFANLAKQGNTLIVPSNLSDLSTSIASALTIVNRGMPGAAKG
Sequences:
>Translated_310_residues MNALIFWVVLLVIVFVVLSKTVKIVPQQHAWVLERFGRYHATLSPGLNVVLPFIDRIAYRHVLKEIPLDVPSQVCITRDN TQLQVDGVLYFQVTDPMKASYGSSNFVLAITQLSQTMLRSVIGKLELDKTFEERDFINHSIVSALDDAASNWGVKVLRYE IKDLTPPKEILHAMQAQITAEREKRALVAASEGRRQEQINLASGAREAAIQKSEGERQAAINQAQGEAAAILAVAEANAQ AIQKIAQAIQSQGGMEAVNLKVAEQYVNAFANLAKQGNTLIVPSNLSDLSTSIASALTIVNRGMPGAAKG >Mature_310_residues MNALIFWVVLLVIVFVVLSKTVKIVPQQHAWVLERFGRYHATLSPGLNVVLPFIDRIAYRHVLKEIPLDVPSQVCITRDN TQLQVDGVLYFQVTDPMKASYGSSNFVLAITQLSQTMLRSVIGKLELDKTFEERDFINHSIVSALDDAASNWGVKVLRYE IKDLTPPKEILHAMQAQITAEREKRALVAASEGRRQEQINLASGAREAAIQKSEGERQAAINQAQGEAAAILAVAEANAQ AIQKIAQAIQSQGGMEAVNLKVAEQYVNAFANLAKQGNTLIVPSNLSDLSTSIASALTIVNRGMPGAAKG
Specific function: Unknown
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family [H]
Homologues:
Organism=Homo sapiens, GI7305503, Length=278, Percent_Identity=51.4388489208633, Blast_Score=277, Evalue=1e-74, Organism=Homo sapiens, GI221316744, Length=200, Percent_Identity=35.5, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI21686995, Length=200, Percent_Identity=35.5, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI38016911, Length=212, Percent_Identity=33.9622641509434, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI7657615, Length=194, Percent_Identity=24.7422680412371, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786697, Length=299, Percent_Identity=42.1404682274247, Blast_Score=239, Evalue=1e-64, Organism=Escherichia coli, GI1790616, Length=203, Percent_Identity=26.1083743842365, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32564147, Length=283, Percent_Identity=47.7031802120141, Blast_Score=279, Evalue=1e-75, Organism=Caenorhabditis elegans, GI17569497, Length=206, Percent_Identity=33.495145631068, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17569493, Length=220, Percent_Identity=31.3636363636364, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI193209764, Length=220, Percent_Identity=31.3636363636364, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193210507, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17570161, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71989948, Length=155, Percent_Identity=35.4838709677419, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71989955, Length=156, Percent_Identity=35.2564102564103, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71987612, Length=170, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25153583, Length=170, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17569499, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71987621, Length=174, Percent_Identity=28.735632183908, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI32566490, Length=193, Percent_Identity=31.6062176165803, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17570459, Length=205, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71989963, Length=119, Percent_Identity=34.453781512605, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI45550506, Length=284, Percent_Identity=49.6478873239437, Blast_Score=274, Evalue=5e-74, Organism=Drosophila melanogaster, GI18860517, Length=212, Percent_Identity=33.0188679245283, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI45556022, Length=169, Percent_Identity=33.7278106508876, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI62484448, Length=197, Percent_Identity=36.0406091370558, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI281365664, Length=171, Percent_Identity=34.5029239766082, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI62484274, Length=197, Percent_Identity=36.0406091370558, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24657857, Length=171, Percent_Identity=34.5029239766082, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21356845, Length=190, Percent_Identity=25.2631578947368, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI28573263, Length=197, Percent_Identity=26.9035532994924, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281361631, Length=190, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281361633, Length=190, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR018080 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7 [H]
EC number: NA
Molecular weight: Translated: 33810; Mature: 33810
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALIFWVVLLVIVFVVLSKTVKIVPQQHAWVLERFGRYHATLSPGLNVVLPFIDRIAYR CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH HVLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDPMKASYGSSNFVLAITQLSQTMLRS HHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEECCCHHHCCCCCCEEEEHHHHHHHHHHH VIGKLELDKTFEERDFINHSIVSALDDAASNWGVKVLRYEIKDLTPPKEILHAMQAQITA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEHHHCCCCHHHHHHHHHHHHHH EREKRALVAASEGRRQEQINLASGAREAAIQKSEGERQAAINQAQGEAAAILAVAEANAQ HHHHHHEEECCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEHHCCHH AIQKIAQAIQSQGGMEAVNLKVAEQYVNAFANLAKQGNTLIVPSNLSDLSTSIASALTIV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH NRGMPGAAKG HCCCCCCCCC >Mature Secondary Structure MNALIFWVVLLVIVFVVLSKTVKIVPQQHAWVLERFGRYHATLSPGLNVVLPFIDRIAYR CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH HVLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDPMKASYGSSNFVLAITQLSQTMLRS HHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEECCCHHHCCCCCCEEEEHHHHHHHHHHH VIGKLELDKTFEERDFINHSIVSALDDAASNWGVKVLRYEIKDLTPPKEILHAMQAQITA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEHHHCCCCHHHHHHHHHHHHHH EREKRALVAASEGRRQEQINLASGAREAAIQKSEGERQAAINQAQGEAAAILAVAEANAQ HHHHHHEEECCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEHHCCHH AIQKIAQAIQSQGGMEAVNLKVAEQYVNAFANLAKQGNTLIVPSNLSDLSTSIASALTIV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH NRGMPGAAKG HCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]