Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is yfjG [H]

Identifier: 238026924

GI number: 238026924

Start: 1417262

End: 1417699

Strand: Direct

Name: yfjG [H]

Synonym: bglu_1g12950

Alternate gene names: 238026924

Gene position: 1417262-1417699 (Clockwise)

Preceding gene: 238026922

Following gene: 238026925

Centisome position: 36.28

GC content: 61.64

Gene sequence:

>438_bases
ATGGCAGATGTCCAGAAAACCGTATTGATCCGCCATTCGGCGGAACAGATGTTCGACCTCGTCACCGACGTGGCCGACTA
CCCGAACTTCCTGCCGTGGTGCGGCGGCATCGAAATCCGCCGCCAGGACGAGACCGGCATGGAGGCGCGGATCGACATCA
ACTTCAAGGGCATCCGGCAGCACTTCGCGACCCGCAACACGCAGGAGCGGCCGCACCGCATCGACATGGAGTTCGCCGAC
GGCCCGTTCAAGAAGTTCACGGGCTACTGGCGCTTCACGCCGCTGCGTGCCGATGCCTGCAAGATCGAGTTTTCGCTGCA
CTACGAATTCACCAGCGTGATCCTCGAGAAGATCATCGGCCCGGTGTTCAGCCACATCGCGAACACCTTCGTCGATTCGT
TCGTCAAGCGCGCCGACCAGCGCTACGGGAAGGGCTGA

Upstream 100 bases:

>100_bases
GCTCATGAAAGGAAATGGCCAACTCGTTTAAAATCACGATTTTAGCAAAGCGGGGCGCGGTTGGCCCGGCTCGGCCCCCA
CTCTTGATGCCGCGAGATTT

Downstream 100 bases:

>100_bases
GCATGCCGGCCGTGCAGGTGTGCTATGCGCTGCCCACGCAGCAGACGCTGATCGATCTGGACGTGCCCGAGAACACCACC
GTGCGCGCGGCGATCGAGGC

Product: cyclase/dehydrase superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFAD
GPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG

Sequences:

>Translated_145_residues
MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFAD
GPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG
>Mature_144_residues
ADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFADG
PFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG

Specific function: Unknown

COG id: COG2867

COG function: function code I; Oligoketide cyclase/lipid transport protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0083 family [H]

Homologues:

Organism=Homo sapiens, GI13376737, Length=139, Percent_Identity=26.6187050359712, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI151101386, Length=139, Percent_Identity=23.021582733813, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI151101384, Length=139, Percent_Identity=23.021582733813, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788972, Length=143, Percent_Identity=43.3566433566434, Blast_Score=132, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI115532702, Length=141, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005031 [H]

Pfam domain/function: PF03364 Polyketide_cyc [H]

EC number: NA

Molecular weight: Translated: 16908; Mature: 16777

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHH
HFATRNTQERPHRIDMEFADGPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIG
HHHCCCCCCCCCEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHH
PVFSHIANTFVDSFVKRADQRYGKG
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHH
HFATRNTQERPHRIDMEFADGPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIG
HHHCCCCCCCCCEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHH
PVFSHIANTFVDSFVKRADQRYGKG
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7524073; 9205837; 9278503 [H]