| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yfjG [H]
Identifier: 238026924
GI number: 238026924
Start: 1417262
End: 1417699
Strand: Direct
Name: yfjG [H]
Synonym: bglu_1g12950
Alternate gene names: 238026924
Gene position: 1417262-1417699 (Clockwise)
Preceding gene: 238026922
Following gene: 238026925
Centisome position: 36.28
GC content: 61.64
Gene sequence:
>438_bases ATGGCAGATGTCCAGAAAACCGTATTGATCCGCCATTCGGCGGAACAGATGTTCGACCTCGTCACCGACGTGGCCGACTA CCCGAACTTCCTGCCGTGGTGCGGCGGCATCGAAATCCGCCGCCAGGACGAGACCGGCATGGAGGCGCGGATCGACATCA ACTTCAAGGGCATCCGGCAGCACTTCGCGACCCGCAACACGCAGGAGCGGCCGCACCGCATCGACATGGAGTTCGCCGAC GGCCCGTTCAAGAAGTTCACGGGCTACTGGCGCTTCACGCCGCTGCGTGCCGATGCCTGCAAGATCGAGTTTTCGCTGCA CTACGAATTCACCAGCGTGATCCTCGAGAAGATCATCGGCCCGGTGTTCAGCCACATCGCGAACACCTTCGTCGATTCGT TCGTCAAGCGCGCCGACCAGCGCTACGGGAAGGGCTGA
Upstream 100 bases:
>100_bases GCTCATGAAAGGAAATGGCCAACTCGTTTAAAATCACGATTTTAGCAAAGCGGGGCGCGGTTGGCCCGGCTCGGCCCCCA CTCTTGATGCCGCGAGATTT
Downstream 100 bases:
>100_bases GCATGCCGGCCGTGCAGGTGTGCTATGCGCTGCCCACGCAGCAGACGCTGATCGATCTGGACGTGCCCGAGAACACCACC GTGCGCGCGGCGATCGAGGC
Product: cyclase/dehydrase superfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFAD GPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG
Sequences:
>Translated_145_residues MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFAD GPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG >Mature_144_residues ADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQHFATRNTQERPHRIDMEFADG PFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIGPVFSHIANTFVDSFVKRADQRYGKG
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Homo sapiens, GI13376737, Length=139, Percent_Identity=26.6187050359712, Blast_Score=76, Evalue=1e-14, Organism=Homo sapiens, GI151101386, Length=139, Percent_Identity=23.021582733813, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI151101384, Length=139, Percent_Identity=23.021582733813, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1788972, Length=143, Percent_Identity=43.3566433566434, Blast_Score=132, Evalue=1e-32, Organism=Caenorhabditis elegans, GI115532702, Length=141, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 16908; Mature: 16777
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHH HFATRNTQERPHRIDMEFADGPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIG HHHCCCCCCCCCEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHH PVFSHIANTFVDSFVKRADQRYGKG HHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGIEIRRQDETGMEARIDINFKGIRQ CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHH HFATRNTQERPHRIDMEFADGPFKKFTGYWRFTPLRADACKIEFSLHYEFTSVILEKIIG HHHCCCCCCCCCEECCCCCCCCHHHHCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHH PVFSHIANTFVDSFVKRADQRYGKG HHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7524073; 9205837; 9278503 [H]