Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238026880
Identifier: 238026880
GI number: 238026880
Start: 1365243
End: 1366205
Strand: Direct
Name: 238026880
Synonym: bglu_1g12480
Alternate gene names: NA
Gene position: 1365243-1366205 (Clockwise)
Preceding gene: 238026879
Following gene: 238026883
Centisome position: 34.95
GC content: 76.01
Gene sequence:
>963_bases ATGACCGCCGTCGTGCAGTCCGTACCGTGGGTCGGGCTGCGCGACACGGCGGTGCGCGATCTCGGCTGGCTGCTGGCCAG CGCCGACCTGCTGGCGGCTTCGGCCGAGGCCCCGCTTGCGCGCCCGTGGCGCGGCCCGGGGGAGGCGGCGCGGATCGCCG CCTGGCTGAGCGCGCTCGACGCCGATCCGGCGCCGCTGGCCGCCGCCCTGGGCGCGGCGCGGCCGACCCGGCTCGGCCGC TACGCCGAGGCGCTGCTCGAATTCTTCGCCGCGCAGGCGCCGGCCTGGACGCTGGTCGCGGCGAACCTGCCGGTGCGCGT GAGCGGCCGCACGCTCGGCGAATGCGACTTGCTGCTGGTCGCGCCCGACGGCGAGCGCCTGCACTGGGAGCTCGCCGTCA AATGCTATCTTTGCGCCGCGCCCGACGGCACGGCCGCGCTGCGCGACTACGTCGGCCCGAATCTGGCCGACCGCTTCGAT CTCAAATACCGCCGGCTCGTCGATCACCAGCTGCGCCTGAGTGCACGCGACGAATTCGCGTTCGCCGGCCAGCCGGGGCC GTGGGCGGCGCGCATGCTCGTGAAGGGCTGGCTGTTCTACCGCGACGGCGCCGCCGTGACGGCGCCCGCGGCGCTCGACC CGGCCCATTCGCGCGGCTTCTGGACGCCATGCGGCAACTGGCCGAGTCTCGCGGCGCGGCAGCCGGCCGGCACCAGCTGG GTGGTGCTGCCGCGGCTCGCGTGGCTCGCGCCGCGGCGCTTCGAAGACGCGGGCCAGGACGGCGCGCTCGTGCCGCTCGA CGCCACGACGCTGTTCGAGGCGGTGCGGGCGCGCCCGGCGCCGTGCTTGGTGGCAGCCGTGCGGCGCGGCGAGGATGGCG CTTGGCACGAGATGCTGCGCGGCTTCATCGTCGACGACGGTTGGCCGGCGCGCGTGCACGCATTCGCCGCCCCGCAGCGG TGA
Upstream 100 bases:
>100_bases CCTACCTGCTGCGCAGCCTGCCCGACAAGGCGAAGGCCTGGGCCGATCTGTGCCTCGCGCGCGACACCATCGGCGGGGCG GGCAAGGCGGCGGGCGACGC
Downstream 100 bases:
>100_bases GGCGGGAAAGCTCGAGAGGAGCGCTGCCGGTCGGCCCGAGCCGTGCCGCGGCGTGGCGGCGATGCCCGGCCGCCGCCGAG CGCATCAGGCGAGGGCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MTAVVQSVPWVGLRDTAVRDLGWLLASADLLAASAEAPLARPWRGPGEAARIAAWLSALDADPAPLAAALGAARPTRLGR YAEALLEFFAAQAPAWTLVAANLPVRVSGRTLGECDLLLVAPDGERLHWELAVKCYLCAAPDGTAALRDYVGPNLADRFD LKYRRLVDHQLRLSARDEFAFAGQPGPWAARMLVKGWLFYRDGAAVTAPAALDPAHSRGFWTPCGNWPSLAARQPAGTSW VVLPRLAWLAPRRFEDAGQDGALVPLDATTLFEAVRARPAPCLVAAVRRGEDGAWHEMLRGFIVDDGWPARVHAFAAPQR
Sequences:
>Translated_320_residues MTAVVQSVPWVGLRDTAVRDLGWLLASADLLAASAEAPLARPWRGPGEAARIAAWLSALDADPAPLAAALGAARPTRLGR YAEALLEFFAAQAPAWTLVAANLPVRVSGRTLGECDLLLVAPDGERLHWELAVKCYLCAAPDGTAALRDYVGPNLADRFD LKYRRLVDHQLRLSARDEFAFAGQPGPWAARMLVKGWLFYRDGAAVTAPAALDPAHSRGFWTPCGNWPSLAARQPAGTSW VVLPRLAWLAPRRFEDAGQDGALVPLDATTLFEAVRARPAPCLVAAVRRGEDGAWHEMLRGFIVDDGWPARVHAFAAPQR >Mature_319_residues TAVVQSVPWVGLRDTAVRDLGWLLASADLLAASAEAPLARPWRGPGEAARIAAWLSALDADPAPLAAALGAARPTRLGRY AEALLEFFAAQAPAWTLVAANLPVRVSGRTLGECDLLLVAPDGERLHWELAVKCYLCAAPDGTAALRDYVGPNLADRFDL KYRRLVDHQLRLSARDEFAFAGQPGPWAARMLVKGWLFYRDGAAVTAPAALDPAHSRGFWTPCGNWPSLAARQPAGTSWV VLPRLAWLAPRRFEDAGQDGALVPLDATTLFEAVRARPAPCLVAAVRRGEDGAWHEMLRGFIVDDGWPARVHAFAAPQR
Specific function: Unknown
COG id: COG3782
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34544; Mature: 34413
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVVQSVPWVGLRDTAVRDLGWLLASADLLAASAEAPLARPWRGPGEAARIAAWLSALD CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC ADPAPLAAALGAARPTRLGRYAEALLEFFAAQAPAWTLVAANLPVRVSGRTLGECDLLLV CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCEEEE APDGERLHWELAVKCYLCAAPDGTAALRDYVGPNLADRFDLKYRRLVDHQLRLSARDEFA CCCCCEEEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE FAGQPGPWAARMLVKGWLFYRDGAAVTAPAALDPAHSRGFWTPCGNWPSLAARQPAGTSW ECCCCCHHHHHHHHHHHEEEECCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCE VVLPRLAWLAPRRFEDAGQDGALVPLDATTLFEAVRARPAPCLVAAVRRGEDGAWHEMLR EHHHHHHHHCCHHHHCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH GFIVDDGWPARVHAFAAPQR HEECCCCCCCEEEEECCCCC >Mature Secondary Structure TAVVQSVPWVGLRDTAVRDLGWLLASADLLAASAEAPLARPWRGPGEAARIAAWLSALD CCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC ADPAPLAAALGAARPTRLGRYAEALLEFFAAQAPAWTLVAANLPVRVSGRTLGECDLLLV CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCEEEE APDGERLHWELAVKCYLCAAPDGTAALRDYVGPNLADRFDLKYRRLVDHQLRLSARDEFA CCCCCEEEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE FAGQPGPWAARMLVKGWLFYRDGAAVTAPAALDPAHSRGFWTPCGNWPSLAARQPAGTSW ECCCCCHHHHHHHHHHHEEEECCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCE VVLPRLAWLAPRRFEDAGQDGALVPLDATTLFEAVRARPAPCLVAAVRRGEDGAWHEMLR EHHHHHHHHCCHHHHCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH GFIVDDGWPARVHAFAAPQR HEECCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA