Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238026879
Identifier: 238026879
GI number: 238026879
Start: 1364158
End: 1365246
Strand: Direct
Name: 238026879
Synonym: bglu_1g12470
Alternate gene names: NA
Gene position: 1364158-1365246 (Clockwise)
Preceding gene: 238026878
Following gene: 238026880
Centisome position: 34.92
GC content: 74.84
Gene sequence:
>1089_bases ATGAGCTGGCTTGACTCGGCACTCGACGAAATGGGCCTCGGGCCGCTCTGGGTGCGGCGTAGTGCCGCCGACGCGCCGGC GGCGGCCGAGGGTGCGGTGGCGCTGGCCGATGACGGGGCCGCGCCGATGCCGGGCGCCGCGCTGGCGCGACCCGCCGCCG GGCAGCGGCCGGCCGCCTCGGCCACTCGCGACGCGAGCGAGGCGCCCTTGCCGCCGGCCGGCACGGCGGCGCACGAGGCG GTGCCGCCGCGCGGCGAGCCGGCGCACGCCGGGGCCCGCGCTGCCTCCGCTGCCTCGCTCGATGCCGCCGCCGAGGCGCA TTCCGCGCCGGCCGCCGCGCGCCGGCGCGAGGCCCGCCCCGACACGGCCGCGCCCGCCGGCGCGGCCGACCAGATGCCGC CCGACGCCGACCCGTCGCTCGAGGATCCGTCGTGGTTCGATCTGGTGCCCATGTCCGATGCCGGCCACTCATTCGAGCCG GCGGAGCCGGCCGTCGCGCGCTCGCCCGTGGCCGGACTCGGCTGGGACGAACTGGAGGCGCGCGTCGCCGAATGCCGGCG CTGCCGGCTTTGCGAGAAGCGCACCCGGACCGTGTTTGGCGTGGGCGACCGCGAGGCCGACTGGATGCTGATCGGCGAGG CGCCCGGCGAGAACGAGGACAAGCAGGGCGAGCCGTTCGTCGGCCAGGCCGGCAAGCTGCTCGACAGCATGCTGCATGCG CTGTCGCTCAAGCGCGGCGAGAACGTCTACATCGCGAACGTGATCAAGTGTCGCCCGCCCGGCAACCGCAATCCCGAGCC CGACGAAGTGGCGCGCTGCGAGCCCTACCTGCAGCGTCAGGTCGAGCTCGTGAAGCCGAAGCTGATCGTCGCGATGGGCC GCTTCGCCGCGCAGACGCTGCTGAAGTCCACGGGCAGCATCGCCTCGATGCGCGGCCGCATCCATCATTACGAAGGCGTG CCGGTGGTGGTGTCCTACCATCCTGCCTACCTGCTGCGCAGCCTGCCCGACAAGGCGAAGGCCTGGGCCGATCTGTGCCT CGCGCGCGACACCATCGGCGGGGCGGGCAAGGCGGCGGGCGACGCATGA
Upstream 100 bases:
>100_bases GAGACCATCGGCCGGCGCAAGCACTACTACCCGGCGAAGCATCGGATGCGTGAGGACGCGATCGTGATGCGGCTGTCGCT GAATTCCCAAGGAGGCGCGC
Downstream 100 bases:
>100_bases CCGCCGTCGTGCAGTCCGTACCGTGGGTCGGGCTGCGCGACACGGCGGTGCGCGATCTCGGCTGGCTGCTGGCCAGCGCC GACCTGCTGGCGGCTTCGGC
Product: phage SPO1 DNA polymerase-like protein
Products: NA
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase Bacteriophage-Type; DNA Polymerase; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; Uracil DNA Glycosylase Superfamily Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Glycosylase; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; DNA Polymerase-Related Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MSWLDSALDEMGLGPLWVRRSAADAPAAAEGAVALADDGAAPMPGAALARPAAGQRPAASATRDASEAPLPPAGTAAHEA VPPRGEPAHAGARAASAASLDAAAEAHSAPAAARRREARPDTAAPAGAADQMPPDADPSLEDPSWFDLVPMSDAGHSFEP AEPAVARSPVAGLGWDELEARVAECRRCRLCEKRTRTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDSMLHA LSLKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVELVKPKLIVAMGRFAAQTLLKSTGSIASMRGRIHHYEGV PVVVSYHPAYLLRSLPDKAKAWADLCLARDTIGGAGKAAGDA
Sequences:
>Translated_362_residues MSWLDSALDEMGLGPLWVRRSAADAPAAAEGAVALADDGAAPMPGAALARPAAGQRPAASATRDASEAPLPPAGTAAHEA VPPRGEPAHAGARAASAASLDAAAEAHSAPAAARRREARPDTAAPAGAADQMPPDADPSLEDPSWFDLVPMSDAGHSFEP AEPAVARSPVAGLGWDELEARVAECRRCRLCEKRTRTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDSMLHA LSLKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVELVKPKLIVAMGRFAAQTLLKSTGSIASMRGRIHHYEGV PVVVSYHPAYLLRSLPDKAKAWADLCLARDTIGGAGKAAGDA >Mature_361_residues SWLDSALDEMGLGPLWVRRSAADAPAAAEGAVALADDGAAPMPGAALARPAAGQRPAASATRDASEAPLPPAGTAAHEAV PPRGEPAHAGARAASAASLDAAAEAHSAPAAARRREARPDTAAPAGAADQMPPDADPSLEDPSWFDLVPMSDAGHSFEPA EPAVARSPVAGLGWDELEARVAECRRCRLCEKRTRTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDSMLHAL SLKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVELVKPKLIVAMGRFAAQTLLKSTGSIASMRGRIHHYEGVP VVVSYHPAYLLRSLPDKAKAWADLCLARDTIGGAGKAAGDA
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37861; Mature: 37730
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWLDSALDEMGLGPLWVRRSAADAPAAAEGAVALADDGAAPMPGAALARPAAGQRPAAS CCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCH ATRDASEAPLPPAGTAAHEAVPPRGEPAHAGARAASAASLDAAAEAHSAPAAARRREARP HCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCC DTAAPAGAADQMPPDADPSLEDPSWFDLVPMSDAGHSFEPAEPAVARSPVAGLGWDELEA CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHH RVAECRRCRLCEKRTRTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDSMLHA HHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH LSLKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVELVKPKLIVAMGRFAAQTL HHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHH LKSTGSIASMRGRIHHYEGVPVVVSYHPAYLLRSLPDKAKAWADLCLARDTIGGAGKAAG HHHCCCHHHHHCCCEECCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC DA CC >Mature Secondary Structure SWLDSALDEMGLGPLWVRRSAADAPAAAEGAVALADDGAAPMPGAALARPAAGQRPAAS CHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCH ATRDASEAPLPPAGTAAHEAVPPRGEPAHAGARAASAASLDAAAEAHSAPAAARRREARP HCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCC DTAAPAGAADQMPPDADPSLEDPSWFDLVPMSDAGHSFEPAEPAVARSPVAGLGWDELEA CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHH RVAECRRCRLCEKRTRTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDSMLHA HHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH LSLKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVELVKPKLIVAMGRFAAQTL HHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHH LKSTGSIASMRGRIHHYEGVPVVVSYHPAYLLRSLPDKAKAWADLCLARDTIGGAGKAAG HHHCCCHHHHHCCCEECCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC DA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA