Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is gltX [H]
Identifier: 238026868
GI number: 238026868
Start: 1351339
End: 1352739
Strand: Direct
Name: gltX [H]
Synonym: bglu_1g12360
Alternate gene names: 238026868
Gene position: 1351339-1352739 (Clockwise)
Preceding gene: 238026867
Following gene: 238026869
Centisome position: 34.59
GC content: 65.88
Gene sequence:
>1401_bases ATGACACGTCAAGTCCGTACCCGTTTCGCGCCGAGTCCGACCGGCTTCATACATCTCGGCAACATCCGCTCCGCCCTCTA CCCGTGGGCCTTCGCCCGCAGCACTCAAGGCGTGTTCGTGCTGCGCATCGAGGACACGGACGTGGAGCGCTCGTCGGACG TCGCTGTCGACGCGATCCTCGAAGGCATGAAGTGGCTCGATCTCGATTTTGACGAAGGCCCGTTCTACCAGATGCAGCGC ATGGACCGCTATCGCGAGGTGCTGGCGCAGATGGTCGAAAAGGGGCTCGCGTACCCATGCTACATGTCCACCGAGGAACT CGACGCGGTGCGCGAGCGCCAGCGCGAGGCCGGTGAGAAGCCGCGCTACGACGGCACCTGGCGGCCGGAGCCGGGCAAGG TGCTGCCGCAGCCGCCCGCGGGCGTGCAGCCGGTGCTGCGTTTCCGCAACCCGCTGACGGGCTCGGTGGTCTGGGACGAC GCCGTGAAGGGCCGCATCGAGATCTCGAACGAGGAACTGGACGATCTCGTGATTGCGCGGCCGGACGGCACGCCTACCTA TAATTTCTGTGTTGTCGTCGACGATCTCGACATGAACATCACGCACGTGATTCGCGGCGACGACCATGTCAACAACACGC CGCGCCAGATCAACATCCTGCGCGCGCTCGGCGGGGAAGTGCCTGTTTACGCGCATCTGCCCACCGTGCTCAACGAGCAG GGCGAGAAGATGAGCAAGCGTCACGGCGCGATGAGCGTGATGGGCTACCGCGATGCAGGCTATCTGCCCGAGGCGGTGCT CAATTATCTCGCGCGGCTCGGCTGGTCGCACGGCGACGCCGAGATCTTCTCGCGCGAGCAGTTCGTGGCGTGGTTCGATC TCGAGCATCTCGGCAAGTCGCCGGCGCAGTACGACTTGGCCAAGCTGAACTGGTTCAACAACCATTACATCAAGGAAGCC GACAACGCGCGCCTCGCGGCGCTCGCCAAGCCGTTTTTCGCGGCGCTCGGCATCGACGACACGGCACTGGAGAGCGGCCC GGAACTGGCTGCCGTGATCGGCCTGATGAAGGATCGCGCCTCGACCGTCAAGGAGATCGCCGAGGGCGCGGCGATGTTCT ATCGCATCCCGGCGCCCGACGCAGACGAACTCGCGCAGCGTGTGACCGAGGCCGTGAAGCCGGCGCTCGCGGCCTTCACC GAGGCGCTGAAGACGGCCGAGTGGAGCAAGGAAGGCATCGCCGCCGCGCTGAAGGCGACGCTCGCCGCGCACGGGCTCAA GATGCCGGCGCTGGCCATGCCGGTGCGGCTGCTGGTGGTCGGCACCACGCATACGCCATCGCTCGACGCCGTGCTCGCGC TGTTCGAGCGCGACGTGGTGATTTCGCGGCTCAGCGCATGA
Upstream 100 bases:
>100_bases TCGTTCCGGTGCCGGCGGTTTCGCGCAGTCGCTCGCGGCGTGCGCCGTCACCGCACCATCATTCATCGGGCCGCCGCGAG CGGCCATCGAGCTACCGTCC
Downstream 100 bases:
>100_bases GAGCGTGATCGACAAGGCTGAACGGGGCGGCGCGCGGCGCGGCTGACGTGGCCGCACGCCTCCTATGCCCTAGCTTGCCG ATGTTTCGCAAAAAATTTTG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MTRQVRTRFAPSPTGFIHLGNIRSALYPWAFARSTQGVFVLRIEDTDVERSSDVAVDAILEGMKWLDLDFDEGPFYQMQR MDRYREVLAQMVEKGLAYPCYMSTEELDAVRERQREAGEKPRYDGTWRPEPGKVLPQPPAGVQPVLRFRNPLTGSVVWDD AVKGRIEISNEELDDLVIARPDGTPTYNFCVVVDDLDMNITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQ GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQFVAWFDLEHLGKSPAQYDLAKLNWFNNHYIKEA DNARLAALAKPFFAALGIDDTALESGPELAAVIGLMKDRASTVKEIAEGAAMFYRIPAPDADELAQRVTEAVKPALAAFT EALKTAEWSKEGIAAALKATLAAHGLKMPALAMPVRLLVVGTTHTPSLDAVLALFERDVVISRLSA
Sequences:
>Translated_466_residues MTRQVRTRFAPSPTGFIHLGNIRSALYPWAFARSTQGVFVLRIEDTDVERSSDVAVDAILEGMKWLDLDFDEGPFYQMQR MDRYREVLAQMVEKGLAYPCYMSTEELDAVRERQREAGEKPRYDGTWRPEPGKVLPQPPAGVQPVLRFRNPLTGSVVWDD AVKGRIEISNEELDDLVIARPDGTPTYNFCVVVDDLDMNITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQ GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQFVAWFDLEHLGKSPAQYDLAKLNWFNNHYIKEA DNARLAALAKPFFAALGIDDTALESGPELAAVIGLMKDRASTVKEIAEGAAMFYRIPAPDADELAQRVTEAVKPALAAFT EALKTAEWSKEGIAAALKATLAAHGLKMPALAMPVRLLVVGTTHTPSLDAVLALFERDVVISRLSA >Mature_465_residues TRQVRTRFAPSPTGFIHLGNIRSALYPWAFARSTQGVFVLRIEDTDVERSSDVAVDAILEGMKWLDLDFDEGPFYQMQRM DRYREVLAQMVEKGLAYPCYMSTEELDAVRERQREAGEKPRYDGTWRPEPGKVLPQPPAGVQPVLRFRNPLTGSVVWDDA VKGRIEISNEELDDLVIARPDGTPTYNFCVVVDDLDMNITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG EKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQFVAWFDLEHLGKSPAQYDLAKLNWFNNHYIKEAD NARLAALAKPFFAALGIDDTALESGPELAAVIGLMKDRASTVKEIAEGAAMFYRIPAPDADELAQRVTEAVKPALAAFTE ALKTAEWSKEGIAAALKATLAAHGLKMPALAMPVRLLVVGTTHTPSLDAVLALFERDVVISRLSA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=327, Percent_Identity=35.474006116208, Blast_Score=197, Evalue=3e-50, Organism=Escherichia coli, GI1788743, Length=470, Percent_Identity=49.1489361702128, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI226510925, Length=249, Percent_Identity=37.7510040160643, Blast_Score=141, Evalue=9e-35, Organism=Caenorhabditis elegans, GI71993394, Length=340, Percent_Identity=33.5294117647059, Blast_Score=173, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6324540, Length=335, Percent_Identity=37.0149253731343, Blast_Score=213, Evalue=5e-56, Organism=Saccharomyces cerevisiae, GI6321192, Length=234, Percent_Identity=25.2136752136752, Blast_Score=71, Evalue=3e-13, Organism=Drosophila melanogaster, GI24665321, Length=493, Percent_Identity=27.1805273833671, Blast_Score=194, Evalue=8e-50,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 51762; Mature: 51630
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQVRTRFAPSPTGFIHLGNIRSALYPWAFARSTQGVFVLRIEDTDVERSSDVAVDAIL CCCCCCCCCCCCCCCEEEECCHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH EGMKWLDLDFDEGPFYQMQRMDRYREVLAQMVEKGLAYPCYMSTEELDAVRERQREAGEK CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPQPPAGVQPVLRFRNPLTGSVVWDDAVKGRIEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDLDMNITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQ CCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHH GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQFVAWFDLEHLGKS HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEHHHHCCC PAQYDLAKLNWFNNHYIKEADNARLAALAKPFFAALGIDDTALESGPELAAVIGLMKDRA CCCCHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHH STVKEIAEGAAMFYRIPAPDADELAQRVTEAVKPALAAFTEALKTAEWSKEGIAAALKAT HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAHGLKMPALAMPVRLLVVGTTHTPSLDAVLALFERDVVISRLSA HHHCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TRQVRTRFAPSPTGFIHLGNIRSALYPWAFARSTQGVFVLRIEDTDVERSSDVAVDAIL CCCCCCCCCCCCCCEEEECCHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH EGMKWLDLDFDEGPFYQMQRMDRYREVLAQMVEKGLAYPCYMSTEELDAVRERQREAGEK CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPQPPAGVQPVLRFRNPLTGSVVWDDAVKGRIEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDLDMNITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQ CCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHH GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQFVAWFDLEHLGKS HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEHHHHCCC PAQYDLAKLNWFNNHYIKEADNARLAALAKPFFAALGIDDTALESGPELAAVIGLMKDRA CCCCHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHH STVKEIAEGAAMFYRIPAPDADELAQRVTEAVKPALAAFTEALKTAEWSKEGIAAALKAT HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAHGLKMPALAMPVRLLVVGTTHTPSLDAVLALFERDVVISRLSA HHHCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA