Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is dorA [H]
Identifier: 238026867
GI number: 238026867
Start: 1348618
End: 1351095
Strand: Direct
Name: dorA [H]
Synonym: bglu_1g12350
Alternate gene names: 238026867
Gene position: 1348618-1351095 (Clockwise)
Preceding gene: 238026866
Following gene: 238026868
Centisome position: 34.52
GC content: 67.55
Gene sequence:
>2478_bases ATGCCGAAGGAACCTGATTCGCCGCTCGCCACCGGCCTTTCGCGGCGCGCATTCGTCAAGGCGGCGTTCGCCACCGGCCT GTATGGCGCGACGGCCGGCTTCGGGCTGCTGGAGCCGTGCGCGCGCGCGGCGTCCGCGGCCTCGTCGGATGACACGCGTG ACGTCCTGACGGGATCGCACTGGGGCGCCTTTCGCGCGAGCGTGAAGAACGGCCTCATTACCGGCGTGAAGCCCTGGGAG GGCGATCCGCATCCGTCGCATCAATTGCCGGGCGTGATCGACTCGATCTACTCGCCGACCCGGATCCGCTATCCCATGGT CCGGCGCGCGTGGCTCGAGCACGGGCCCGGCGCCGACGTCGCGGGCCGCGGGCGCGGCGACTTCGTGCGCGTCAGCTGGG ATCGGGCGCTCGACCTGGTCGCCAACGAACTGCGGCGCGTGCGCGGCAAGTACGGCGCGGGCGGCATCTACGCGGGCTCA TACGGCTGGCAATCGACGGGCAAGCTACAGCCGCCGCGCACGCTGCTCGCCCGCATGATGACCGTCAACGGCGGCTTCGT CGGCTACAGCGGCGATTATTCGACGGGCGCGGCCCAGGTCATCCTGCCTTATGTGGTGGGCTCGATCGACGTCTACGAGC AGCCGACCGTCTGGCCCGTGGTCATCGACCATACCGAGCTGATGGTGTTCTGGGGCGCCAATCCTGTCTCGACCAACCAG ATCGGCTGGCTGGTGCCCGACCACGCCGCCTATCCGGCCATGGAAGCGCTGCGCAGGAAAGGCACGCGCGTGATCTGCAT CGATCCCGTACGCAGCGAGACCTGCCGCTACTTCGATGCCGAGTGGATCGCGCCGCGCCCGCAGACCGATGTCGCGATGA TGCTGGGCATCGCCCATACGCTGTATCTCGAGCAGCGCTATGACAAGGCGTTCCTCGCGCGCTACACGACCGGTTTCGAA CGTTTCGTGCCCTACCTGACCGGCCAATCGGATCAGGTGCCGAAGGATGCCGAGTGGGCCTCGCGCATCTGCGGGGTGCC GGCCGAAACGATCCGCGGCCTCGCACGCCAGTTCGCCGCCAAGCGCACCATGCTTGCCGCCGGGTGGTCGATCCAGCGCC AGCATCACGGCGAGCAGGCGCACTGGATGCTCGTCACGCTCGCCAGCATGCTCGGCCAGATCGGCCTGCCCGGCGGCGGA TACGGCTTCACCTATCACTACGCGAACGGCGGCAGCCCGGCGGCGAAGAGCCCGGTGCTGCCCGGCATCGACGCAGGCAA CGCGCGCGCCGTGTTCAAGGACGCCGCCGCGCGCAAGATTCCCGTGTCGCGCGTGGTGGAGATGCTGAACAATCCCGGCA AGCCGTTCGACTTCAACGGCACGCGCGCGATTTACCCGGACGTTCACCTGGCCTACTGGGCGGGCGGCGATCCGTTCGCG CACCACCAGGATCGCAACGCGATGATCGCGGCATGGCGCAAGCTCGATACCTTCATCGTCCACGATTTCCAGTGGACCCC GACGGCACGCCATGCCGACATCGTGCTGCCCGCCGCGACACCCTACGAGCGCGACGACATCGAGCAGATTGGCGACTATT CGAGCACGCACATCCTCGCGCTGCATCGGGTCGTCCCGCCGCTCTACGAGGCGCGCAGCGATTACGCGATTTTCGCCGCG ATCTGCGAGCGGCTCGGCACCGGCAAGGCGTTTACCGAGGGGCGCGGCGAGATGGATTGGATTCGCCTCTTCTACGAGGC GGCTCGCGTGCAGGCGCGCGGCATGTCGATGGAAATGCCGGTATTCGAGGCGTTCTGGAACAGCAACCAGGCGCTGGCGT TTCCGATCGAGGCCGCTGCCCGGCGCTTCGTGCGCCACCAGGCGTTCCGCGACGATCCGCTGCTCAACGCGCTTGGCACC GCCTCGGGGAAGATCGAGATCTACAGTTCGGCCATCGAGCGCATGCACTACGACGATTGCCCGCCGCATCCGACCTGGAT GGAGCCGATCGAGCGGCTCGACGGGCCGGGCGCGAAGTTTCCGCTGCATGTCGTGAGCCCGCATCCGCACAGCCGTCTGC ATTCGCAGCTGTGTGGCACGATGCTGCGCAAGACCTACACCATCCGCGATCGCGAGCCATGCCTGATGCATCCCGAGGAC GCCTCCGCGCGGGGTATCGTGGACGGCGATGTGATTCGCGTGTTCAACGAGCGCGGCCAGATTCTGGTGGGCGTGAAGGT GACCGACACGATTCGCCGCGGCTGCCTGATGATCCACGAGGGCGGCTGGTTCGATCCCGTCGAGCCGGGCCGTCCCGGCA GCCTGTGCCGTTACGGTGACGTCAACAATCTGACGGTCGGCATTGGCACGTCGCGACTGGCGCAGGGCACCTGCGCCCAT ACGGCGATCGCCGACGCCGAGAAGTTTCACGGCGAGCCGCCGGTGCTCGACGTGTTTCAGGCGCCTGAGGGCGCATGA
Upstream 100 bases:
>100_bases CCGCCCGGCGGCGGGCCTGACGGCGCGACCGGCCACGCCGGCGACGTCGCGCAGGCGTGCTCGCGCAGCTGCCGCTCACT CGCAAACGGAGGGCATCACC
Downstream 100 bases:
>100_bases CGCCATGGGCTTTCGCGGCCGGGCGGCGCAATGGCCGCCGCCCGGCCGCGCATCCGGTTCGGCCTGCATCCACTATCGGG CCGGCATCCCGCCCACTGCC
Product: Anaerobic dehydrogenase
Products: NA
Alternate protein names: DMSO reductase; DMSOR [H]
Number of amino acids: Translated: 825; Mature: 824
Protein sequence:
>825_residues MPKEPDSPLATGLSRRAFVKAAFATGLYGATAGFGLLEPCARAASAASSDDTRDVLTGSHWGAFRASVKNGLITGVKPWE GDPHPSHQLPGVIDSIYSPTRIRYPMVRRAWLEHGPGADVAGRGRGDFVRVSWDRALDLVANELRRVRGKYGAGGIYAGS YGWQSTGKLQPPRTLLARMMTVNGGFVGYSGDYSTGAAQVILPYVVGSIDVYEQPTVWPVVIDHTELMVFWGANPVSTNQ IGWLVPDHAAYPAMEALRRKGTRVICIDPVRSETCRYFDAEWIAPRPQTDVAMMLGIAHTLYLEQRYDKAFLARYTTGFE RFVPYLTGQSDQVPKDAEWASRICGVPAETIRGLARQFAAKRTMLAAGWSIQRQHHGEQAHWMLVTLASMLGQIGLPGGG YGFTYHYANGGSPAAKSPVLPGIDAGNARAVFKDAAARKIPVSRVVEMLNNPGKPFDFNGTRAIYPDVHLAYWAGGDPFA HHQDRNAMIAAWRKLDTFIVHDFQWTPTARHADIVLPAATPYERDDIEQIGDYSSTHILALHRVVPPLYEARSDYAIFAA ICERLGTGKAFTEGRGEMDWIRLFYEAARVQARGMSMEMPVFEAFWNSNQALAFPIEAAARRFVRHQAFRDDPLLNALGT ASGKIEIYSSAIERMHYDDCPPHPTWMEPIERLDGPGAKFPLHVVSPHPHSRLHSQLCGTMLRKTYTIRDREPCLMHPED ASARGIVDGDVIRVFNERGQILVGVKVTDTIRRGCLMIHEGGWFDPVEPGRPGSLCRYGDVNNLTVGIGTSRLAQGTCAH TAIADAEKFHGEPPVLDVFQAPEGA
Sequences:
>Translated_825_residues MPKEPDSPLATGLSRRAFVKAAFATGLYGATAGFGLLEPCARAASAASSDDTRDVLTGSHWGAFRASVKNGLITGVKPWE GDPHPSHQLPGVIDSIYSPTRIRYPMVRRAWLEHGPGADVAGRGRGDFVRVSWDRALDLVANELRRVRGKYGAGGIYAGS YGWQSTGKLQPPRTLLARMMTVNGGFVGYSGDYSTGAAQVILPYVVGSIDVYEQPTVWPVVIDHTELMVFWGANPVSTNQ IGWLVPDHAAYPAMEALRRKGTRVICIDPVRSETCRYFDAEWIAPRPQTDVAMMLGIAHTLYLEQRYDKAFLARYTTGFE RFVPYLTGQSDQVPKDAEWASRICGVPAETIRGLARQFAAKRTMLAAGWSIQRQHHGEQAHWMLVTLASMLGQIGLPGGG YGFTYHYANGGSPAAKSPVLPGIDAGNARAVFKDAAARKIPVSRVVEMLNNPGKPFDFNGTRAIYPDVHLAYWAGGDPFA HHQDRNAMIAAWRKLDTFIVHDFQWTPTARHADIVLPAATPYERDDIEQIGDYSSTHILALHRVVPPLYEARSDYAIFAA ICERLGTGKAFTEGRGEMDWIRLFYEAARVQARGMSMEMPVFEAFWNSNQALAFPIEAAARRFVRHQAFRDDPLLNALGT ASGKIEIYSSAIERMHYDDCPPHPTWMEPIERLDGPGAKFPLHVVSPHPHSRLHSQLCGTMLRKTYTIRDREPCLMHPED ASARGIVDGDVIRVFNERGQILVGVKVTDTIRRGCLMIHEGGWFDPVEPGRPGSLCRYGDVNNLTVGIGTSRLAQGTCAH TAIADAEKFHGEPPVLDVFQAPEGA >Mature_824_residues PKEPDSPLATGLSRRAFVKAAFATGLYGATAGFGLLEPCARAASAASSDDTRDVLTGSHWGAFRASVKNGLITGVKPWEG DPHPSHQLPGVIDSIYSPTRIRYPMVRRAWLEHGPGADVAGRGRGDFVRVSWDRALDLVANELRRVRGKYGAGGIYAGSY GWQSTGKLQPPRTLLARMMTVNGGFVGYSGDYSTGAAQVILPYVVGSIDVYEQPTVWPVVIDHTELMVFWGANPVSTNQI GWLVPDHAAYPAMEALRRKGTRVICIDPVRSETCRYFDAEWIAPRPQTDVAMMLGIAHTLYLEQRYDKAFLARYTTGFER FVPYLTGQSDQVPKDAEWASRICGVPAETIRGLARQFAAKRTMLAAGWSIQRQHHGEQAHWMLVTLASMLGQIGLPGGGY GFTYHYANGGSPAAKSPVLPGIDAGNARAVFKDAAARKIPVSRVVEMLNNPGKPFDFNGTRAIYPDVHLAYWAGGDPFAH HQDRNAMIAAWRKLDTFIVHDFQWTPTARHADIVLPAATPYERDDIEQIGDYSSTHILALHRVVPPLYEARSDYAIFAAI CERLGTGKAFTEGRGEMDWIRLFYEAARVQARGMSMEMPVFEAFWNSNQALAFPIEAAARRFVRHQAFRDDPLLNALGTA SGKIEIYSSAIERMHYDDCPPHPTWMEPIERLDGPGAKFPLHVVSPHPHSRLHSQLCGTMLRKTYTIRDREPCLMHPEDA SARGIVDGDVIRVFNERGQILVGVKVTDTIRRGCLMIHEGGWFDPVEPGRPGSLCRYGDVNNLTVGIGTSRLAQGTCAHT AIADAEKFHGEPPVLDVFQAPEGA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081994, Length=817, Percent_Identity=45.4100367197062, Blast_Score=747, Evalue=0.0, Organism=Escherichia coli, GI1787231, Length=783, Percent_Identity=48.2758620689655, Blast_Score=735, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=785, Percent_Identity=46.2420382165605, Blast_Score=710, Evalue=0.0, Organism=Escherichia coli, GI87081797, Length=861, Percent_Identity=30.4297328687573, Blast_Score=306, Evalue=5e-84, Organism=Escherichia coli, GI1787870, Length=861, Percent_Identity=29.1521486643438, Blast_Score=282, Evalue=7e-77, Organism=Escherichia coli, GI171474008, Length=851, Percent_Identity=28.2021151586369, Blast_Score=257, Evalue=2e-69, Organism=Escherichia coli, GI3868721, Length=476, Percent_Identity=27.7310924369748, Blast_Score=124, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 90884; Mature: 90753
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKEPDSPLATGLSRRAFVKAAFATGLYGATAGFGLLEPCARAASAASSDDTRDVLTGSH CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCC WGAFRASVKNGLITGVKPWEGDPHPSHQLPGVIDSIYSPTRIRYPMVRRAWLEHGPGADV CHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEECCHHHHHHHHHCCCCCCC AGRGRGDFVRVSWDRALDLVANELRRVRGKYGAGGIYAGSYGWQSTGKLQPPRTLLARMM CCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH TVNGGFVGYSGDYSTGAAQVILPYVVGSIDVYEQPTVWPVVIDHTELMVFWGANPVSTNQ HHCCCEEEECCCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEEECCCCCCCCC IGWLVPDHAAYPAMEALRRKGTRVICIDPVRSETCRYFDAEWIAPRPQTDVAMMLGIAHT CEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH LYLEQRYDKAFLARYTTGFERFVPYLTGQSDQVPKDAEWASRICGVPAETIRGLARQFAA HHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH KRTMLAAGWSIQRQHHGEQAHWMLVTLASMLGQIGLPGGGYGFTYHYANGGSPAAKSPVL HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC PGIDAGNARAVFKDAAARKIPVSRVVEMLNNPGKPFDFNGTRAIYPDVHLAYWAGGDPFA CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCC HHQDRNAMIAAWRKLDTFIVHDFQWTPTARHADIVLPAATPYERDDIEQIGDYSSTHILA CCCCCCHHHHHHHHHCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCHHEEE LHRVVPPLYEARSDYAIFAAICERLGTGKAFTEGRGEMDWIRLFYEAARVQARGMSMEMP HHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC VFEAFWNSNQALAFPIEAAARRFVRHQAFRDDPLLNALGTASGKIEIYSSAIERMHYDDC HHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEHHHHHHHHCCCCC PPHPTWMEPIERLDGPGAKFPLHVVSPHPHSRLHSQLCGTMLRKTYTIRDREPCLMHPED CCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCEECCCC ASARGIVDGDVIRVFNERGQILVGVKVTDTIRRGCLMIHEGGWFDPVEPGRPGSLCRYGD CCCCCCCCCHHHHEECCCCCEEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEECCC VNNLTVGIGTSRLAQGTCAHTAIADAEKFHGEPPVLDVFQAPEGA CCCEEEECCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCC >Mature Secondary Structure PKEPDSPLATGLSRRAFVKAAFATGLYGATAGFGLLEPCARAASAASSDDTRDVLTGSH CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCC WGAFRASVKNGLITGVKPWEGDPHPSHQLPGVIDSIYSPTRIRYPMVRRAWLEHGPGADV CHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCEECCHHHHHHHHHCCCCCCC AGRGRGDFVRVSWDRALDLVANELRRVRGKYGAGGIYAGSYGWQSTGKLQPPRTLLARMM CCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH TVNGGFVGYSGDYSTGAAQVILPYVVGSIDVYEQPTVWPVVIDHTELMVFWGANPVSTNQ HHCCCEEEECCCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEEECCCCCCCCC IGWLVPDHAAYPAMEALRRKGTRVICIDPVRSETCRYFDAEWIAPRPQTDVAMMLGIAHT CEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH LYLEQRYDKAFLARYTTGFERFVPYLTGQSDQVPKDAEWASRICGVPAETIRGLARQFAA HHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH KRTMLAAGWSIQRQHHGEQAHWMLVTLASMLGQIGLPGGGYGFTYHYANGGSPAAKSPVL HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC PGIDAGNARAVFKDAAARKIPVSRVVEMLNNPGKPFDFNGTRAIYPDVHLAYWAGGDPFA CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCC HHQDRNAMIAAWRKLDTFIVHDFQWTPTARHADIVLPAATPYERDDIEQIGDYSSTHILA CCCCCCHHHHHHHHHCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCHHEEE LHRVVPPLYEARSDYAIFAAICERLGTGKAFTEGRGEMDWIRLFYEAARVQARGMSMEMP HHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC VFEAFWNSNQALAFPIEAAARRFVRHQAFRDDPLLNALGTASGKIEIYSSAIERMHYDDC HHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEHHHHHHHHCCCCC PPHPTWMEPIERLDGPGAKFPLHVVSPHPHSRLHSQLCGTMLRKTYTIRDREPCLMHPED CCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCEECCCC ASARGIVDGDVIRVFNERGQILVGVKVTDTIRRGCLMIHEGGWFDPVEPGRPGSLCRYGD CCCCCCCCCHHHHEECCCCCEEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEECCC VNNLTVGIGTSRLAQGTCAHTAIADAEKFHGEPPVLDVFQAPEGA CCCEEEECCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8856102; 8890911; 8890912; 10835270; 10985771 [H]