| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026809
Identifier: 238026809
GI number: 238026809
Start: 1282138
End: 1282758
Strand: Direct
Name: 238026809
Synonym: bglu_1g11680
Alternate gene names: NA
Gene position: 1282138-1282758 (Clockwise)
Preceding gene: 238026808
Following gene: 238026810
Centisome position: 32.82
GC content: 71.66
Gene sequence:
>621_bases ATGAAACGATCCAGCAGAGCATGGCGCGCGGCGGCGATTGCCGTCGCGCTCGGCATTCCCTTCGCGGCATCCGCCCAGAC CAACCCGAACCCGACGCCGCACGCCCCGCCCGCGGCCGACCCGCGGGTCGGCGCGGAGATCGTCAAGCCGGCCTCGCCGG TGGGCGACACCGATATCGCGAAGCGTCCGCAGGGCATCGATCCCGAGTTCGTCGACAAGGCCTCGCTGGCCGGCAAGCGC GAGGTGCAGGCGAGCCAGCTCGCGATCGAGCGTTCGGCGTCGCCGGCGGTGCGCGAGTTCGCGAAGATGATGCTCGACGA CCATGGCCGCGCCAACGAGCAGTTGCGCATGATTGCCGCCAAGCAGGGCGTGCCGGCGCAGGCGGCGAAGATCGTCGATC CCGACGTGGAGGCGCTGCGCGGCAAGCAGGGCCACGATTTCGACGTCGCCTATCTGGCGGTGGCGGGGCCGGCCGCGCAC CGGCAGGCGATCCGGCTGTTCGAGGCGCAGGCGCGCGGCGGCCATTCGAGCGAGCTGCGCGCGTTCGCGCAGCAGGGCCT GCCGATGTTGCGCAAGCATCTGGCCGCCGCCCAGAAGCTCGCGCAGCAGGTGGGCAACTGA
Upstream 100 bases:
>100_bases CGGGTTCGCACGTGATTCGCCGGTGACGGCCTCCGAGATTCCGTGATCGCGCCGCTGCCCGCGCGCCGGCCCGATCCGCA ATGCGACCAGGAGAGCGATG
Downstream 100 bases:
>100_bases GGCGCGGGCTTGGCGCGTGGCCGCGCCGCCGCCCGTTTCAGGCCGGCGGGAACGCCGGCATGCCAATGCCGAACAGGAGG GAGGGTGCACGATGACGACC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein-Like Protein; Secreted Protein; Lipoprotein
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MKRSSRAWRAAAIAVALGIPFAASAQTNPNPTPHAPPAADPRVGAEIVKPASPVGDTDIAKRPQGIDPEFVDKASLAGKR EVQASQLAIERSASPAVREFAKMMLDDHGRANEQLRMIAAKQGVPAQAAKIVDPDVEALRGKQGHDFDVAYLAVAGPAAH RQAIRLFEAQARGGHSSELRAFAQQGLPMLRKHLAAAQKLAQQVGN
Sequences:
>Translated_206_residues MKRSSRAWRAAAIAVALGIPFAASAQTNPNPTPHAPPAADPRVGAEIVKPASPVGDTDIAKRPQGIDPEFVDKASLAGKR EVQASQLAIERSASPAVREFAKMMLDDHGRANEQLRMIAAKQGVPAQAAKIVDPDVEALRGKQGHDFDVAYLAVAGPAAH RQAIRLFEAQARGGHSSELRAFAQQGLPMLRKHLAAAQKLAQQVGN >Mature_206_residues MKRSSRAWRAAAIAVALGIPFAASAQTNPNPTPHAPPAADPRVGAEIVKPASPVGDTDIAKRPQGIDPEFVDKASLAGKR EVQASQLAIERSASPAVREFAKMMLDDHGRANEQLRMIAAKQGVPAQAAKIVDPDVEALRGKQGHDFDVAYLAVAGPAAH RQAIRLFEAQARGGHSSELRAFAQQGLPMLRKHLAAAQKLAQQVGN
Specific function: Unknown
COG id: COG3652
COG function: function code S; Predicted outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21806; Mature: 21806
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSSRAWRAAAIAVALGIPFAASAQTNPNPTPHAPPAADPRVGAEIVKPASPVGDTDIA CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHH KRPQGIDPEFVDKASLAGKREVQASQLAIERSASPAVREFAKMMLDDHGRANEQLRMIAA CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH KQGVPAQAAKIVDPDVEALRGKQGHDFDVAYLAVAGPAAHRQAIRLFEAQARGGHSSELR HCCCCHHHHHHCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHH AFAQQGLPMLRKHLAAAQKLAQQVGN HHHHHCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKRSSRAWRAAAIAVALGIPFAASAQTNPNPTPHAPPAADPRVGAEIVKPASPVGDTDIA CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHH KRPQGIDPEFVDKASLAGKREVQASQLAIERSASPAVREFAKMMLDDHGRANEQLRMIAA CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH KQGVPAQAAKIVDPDVEALRGKQGHDFDVAYLAVAGPAAHRQAIRLFEAQARGGHSSELR HCCCCHHHHHHCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHH AFAQQGLPMLRKHLAAAQKLAQQVGN HHHHHCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA