| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yjjL [C]
Identifier: 238026776
GI number: 238026776
Start: 1243057
End: 1244286
Strand: Direct
Name: yjjL [C]
Synonym: bglu_1g11340
Alternate gene names: 238026776
Gene position: 1243057-1244286 (Clockwise)
Preceding gene: 238026775
Following gene: 238026777
Centisome position: 31.82
GC content: 70.65
Gene sequence:
>1230_bases ATGTCTGCCGTGCAGTGGCGCGTGTTCGTGCTGTTTTCGATGGGCTATTTCGTGTCGTACGTGTTCCGCGGCGTCAATCT GGGCTTCGCGCCGCTGATCACGCACGACCTCGGGCTGTCCGCGGCGGACCTGGGGCTGCTGACGAGCCTCTACTTCCTGG GCTTCGCCGGTGCCCAGATCCCGGCCGGCGTGCTGCTCGATCACTACGGCCCGCGGCGCGTGACGGCCGCCATGCTGCTG TTCGCGGCGGCCGGCATCGCCGTGTTCGGGCTCGCGCACGGCATCGGCGCGATGATGGTCGGCCGCCTGCTGATCGGGAT CGGCGTATCGGTGTGTCTCGGCGCCGCCTTCAAGGCGATCGCGGAGTTCTTTCCGGTCGCGCGGCTGCCGCTCGTCAACG GCTGCGTGATGGCGGTCGGCGGCTTCGGCGGTGTCGCGGTCGGCTCGCCGCTCGCCTGGACGCTCGGCATGGTCAGCTGG CGAATGGTCTGCGCCGGGCTCTGCGGGTTCACCGTGGTGGTGGCCGCGCTGCTCTGGAGCGGCGCGCCCGACGCGGCGCG CAGCCACCGCCAGGCCAGCCTGATCAGCCAGTTCAAGGGCACCTGGCACATCCTGCAGAGCGCCGCGTTCTGGAAGATCG CCTCGTTCTCGGTGGTCACGCAGGGCGTGTTCTTCGCGATGCAGTCGCTCTGGGTCGGCCCCTACATGCGCGACGTGATG GGCTTCGCGCCGCATCGGGCGGCCGCGCTCGTCTCGGTGATCGGGCTGGCGATGATGGCGGGCAGCTTCGCCACCGGCGC GCTGGCGCGGCTGCTGGAGCGGCGCGGCCTGTCGGTCTACGCGTTCTGCGGAATCGGCATGGGCTGCTTCGTCGCCACCC AGCTGGCCATCATGCTGGGCGCGCCGCTGCCGGCCGAGGTGCTGTGGGCCGGCTACGGCGCGTTCGGCGGGATCGGCATC CTCAGCTACGCGATCCTCGCCGAGCATTTTCCCGCGCATCTGATCGGCCGCGCCAACACCACCATCACGCTGGTGATCTT CGTGCTGATCTTCGGCTTTCAGGTCGGCGTCGGCGCGGTGCTGTCGCAATGGCCGACCCAGGGCGGCCATTATCCGCGCG CCGCGCACCTGAGCGCCTGGGCGGTGCTGGTCGCGCTGCAGATCGCGGGCGCGATCTGGTACGTGCTGCCGGGGCGCGCG GCGATCGGCGCCGAACGCCGTCCGGGCTGA
Upstream 100 bases:
>100_bases GCCTGGCTCGTGATTCGCGCGCACGCCGTCACCGAGGTGACGGCGTTTTCGTTTCAGGCAAGGCCGCCCGCGGCGCTGGC GGCGGATTCGGAGGGGACGC
Downstream 100 bases:
>100_bases CGCGCCGCGCGGCGCGGGCCGCCGAGCCCGCCGGCGCGAGGGCGGTGGGGCGGTGGGGCGGTGGGATTTGCTCCTGGCTC TCGGTGCCGCGGTCGTACCG
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Transporter; Transporter MFS Superfamily; Sugar Phosphate Permease; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSAVQWRVFVLFSMGYFVSYVFRGVNLGFAPLITHDLGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHYGPRRVTAAMLL FAAAGIAVFGLAHGIGAMMVGRLLIGIGVSVCLGAAFKAIAEFFPVARLPLVNGCVMAVGGFGGVAVGSPLAWTLGMVSW RMVCAGLCGFTVVVAALLWSGAPDAARSHRQASLISQFKGTWHILQSAAFWKIASFSVVTQGVFFAMQSLWVGPYMRDVM GFAPHRAAALVSVIGLAMMAGSFATGALARLLERRGLSVYAFCGIGMGCFVATQLAIMLGAPLPAEVLWAGYGAFGGIGI LSYAILAEHFPAHLIGRANTTITLVIFVLIFGFQVGVGAVLSQWPTQGGHYPRAAHLSAWAVLVALQIAGAIWYVLPGRA AIGAERRPG
Sequences:
>Translated_409_residues MSAVQWRVFVLFSMGYFVSYVFRGVNLGFAPLITHDLGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHYGPRRVTAAMLL FAAAGIAVFGLAHGIGAMMVGRLLIGIGVSVCLGAAFKAIAEFFPVARLPLVNGCVMAVGGFGGVAVGSPLAWTLGMVSW RMVCAGLCGFTVVVAALLWSGAPDAARSHRQASLISQFKGTWHILQSAAFWKIASFSVVTQGVFFAMQSLWVGPYMRDVM GFAPHRAAALVSVIGLAMMAGSFATGALARLLERRGLSVYAFCGIGMGCFVATQLAIMLGAPLPAEVLWAGYGAFGGIGI LSYAILAEHFPAHLIGRANTTITLVIFVLIFGFQVGVGAVLSQWPTQGGHYPRAAHLSAWAVLVALQIAGAIWYVLPGRA AIGAERRPG >Mature_408_residues SAVQWRVFVLFSMGYFVSYVFRGVNLGFAPLITHDLGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHYGPRRVTAAMLLF AAAGIAVFGLAHGIGAMMVGRLLIGIGVSVCLGAAFKAIAEFFPVARLPLVNGCVMAVGGFGGVAVGSPLAWTLGMVSWR MVCAGLCGFTVVVAALLWSGAPDAARSHRQASLISQFKGTWHILQSAAFWKIASFSVVTQGVFFAMQSLWVGPYMRDVMG FAPHRAAALVSVIGLAMMAGSFATGALARLLERRGLSVYAFCGIGMGCFVATQLAIMLGAPLPAEVLWAGYGAFGGIGIL SYAILAEHFPAHLIGRANTTITLVIFVLIFGFQVGVGAVLSQWPTQGGHYPRAAHLSAWAVLVALQIAGAIWYVLPGRAA IGAERRPG
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42814; Mature: 42683
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVQWRVFVLFSMGYFVSYVFRGVNLGFAPLITHDLGLSAADLGLLTSLYFLGFAGAQI CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC PAGVLLDHYGPRRVTAAMLLFAAAGIAVFGLAHGIGAMMVGRLLIGIGVSVCLGAAFKAI CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFFPVARLPLVNGCVMAVGGFGGVAVGSPLAWTLGMVSWRMVCAGLCGFTVVVAALLWS HHHHCHHHCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GAPDAARSHRQASLISQFKGTWHILQSAAFWKIASFSVVTQGVFFAMQSLWVGPYMRDVM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH GFAPHRAAALVSVIGLAMMAGSFATGALARLLERRGLSVYAFCGIGMGCFVATQLAIMLG CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHC APLPAEVLWAGYGAFGGIGILSYAILAEHFPAHLIGRANTTITLVIFVLIFGFQVGVGAV CCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LSQWPTQGGHYPRAAHLSAWAVLVALQIAGAIWYVLPGRAAIGAERRPG HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHCCCCCCCC >Mature Secondary Structure SAVQWRVFVLFSMGYFVSYVFRGVNLGFAPLITHDLGLSAADLGLLTSLYFLGFAGAQI CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC PAGVLLDHYGPRRVTAAMLLFAAAGIAVFGLAHGIGAMMVGRLLIGIGVSVCLGAAFKAI CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFFPVARLPLVNGCVMAVGGFGGVAVGSPLAWTLGMVSWRMVCAGLCGFTVVVAALLWS HHHHCHHHCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GAPDAARSHRQASLISQFKGTWHILQSAAFWKIASFSVVTQGVFFAMQSLWVGPYMRDVM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH GFAPHRAAALVSVIGLAMMAGSFATGALARLLERRGLSVYAFCGIGMGCFVATQLAIMLG CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHC APLPAEVLWAGYGAFGGIGILSYAILAEHFPAHLIGRANTTITLVIFVLIFGFQVGVGAV CCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LSQWPTQGGHYPRAAHLSAWAVLVALQIAGAIWYVLPGRAAIGAERRPG HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA