| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is lhgO [H]
Identifier: 238026743
GI number: 238026743
Start: 1210374
End: 1211498
Strand: Direct
Name: lhgO [H]
Synonym: bglu_1g11010
Alternate gene names: 238026743
Gene position: 1210374-1211498 (Clockwise)
Preceding gene: 238026742
Following gene: 238026745
Centisome position: 30.98
GC content: 73.16
Gene sequence:
>1125_bases ATGACGGAGATGGTCGATTGCGTCGTGATCGGCGCGGGAGTGGTCGGCCTGGCGGCCGCGCGCGCCAGTGCGCGGCGCGG CTGGGAGACGGTGATCGTCGAGTCGGAATCGATGATCGGCACCGGCACGAGCTCGCGCAACAGCGAGGTGATCCATGCCG GCATTTACTATTCGGCCGGTTCGCTGAAGGCGCGGCTCTGCGTCGAGGGGCGCGAGCGGCTCTATGCATTCTGCGAGGAG CACCAGGTGCCGTACCGGCGCAGCGGCAAGCTGATCGTGGCCGCCGAGGACGCGCAGCGCGGCACGCTCGCCGAGCTCGA GGCGGCCGCGCGCGCCAACGGCGTGACCGACCTGCGGCGCCTGAGCGGCGACCAGGCGCGCGCGCTCGAACCGGCCCTGC GCTGCGTGGCGGCGCTCGAATCGCCGTCCACCGGCATCGTCGACAGCCACGCGCTGATGCTCGCGCTGCTCGGCGACGCC GAGCGCGCCGGCGCCGTGATCGCCTATCGTTCGCCCGTGATCGGCGGCCAGGTGCTGCACGACGGCGGCCCCGCGATCGA GCTCGAGGTGGGCGGCGCCGAGCCGATGACGCTGCGCGCGCGGCGCGTGGTGAACGCGGCCGGGCTCTACGCCCAGACGG TGGCCGGCGGGCTGCGCGGCCTGCCGCCCGAGTCGGTGCCGCGCGCGCGCTACGCGAAGGGCAACTACTATTCGCTGGCG GGCCGCGCGCCGTTCTCGCGGCTCATCTATCCGGTGCCGGAGCCGGGCGGGCTCGGTGTCCATCTGACGCTCGATCTGGC CAATCAGGCGCGCTTCGGCCCCGACGTCGAATGGATCGACGAGATCGACTTCCGCGTCGATCCGGCCCGCGCCGCGCGCT TCTACGATGCGATCCGCAGCTACTGGCCGGAGCTGCCCGACGAGGCATTGCAGCCGGCCTACGCCGGCGTGCGGCCGAAG CTGGCGCACCCGCCCGGCGGCGGCGACGACTTCGTGATCCAGTCGGCGCGCGCGCACGGCGTGGCCGGCCTCGTCAACCT GTACGGCATCGAGTCGCCGGGGCTGACGGCCTCGCTCGCGATCGCCGAGCAGGTGATCGCGGCGCTCGACGACGCTACGC AGTGA
Upstream 100 bases:
>100_bases GCCAGGCGCTGCGGTATGCTGCGGGGCTGCGCCGCCGCGTGCCGGCCCGCGCCATGCGGCGCCGGGCGCGCCGGCGATTC CAAGAAAGGAGCCTGAGAAG
Downstream 100 bases:
>100_bases CCGTCAACACCGCATCGACCGCCGCCAAGGCATGACGACGCGTCACGAGACGGCGAGGATCGAGGGGCGTTGAGCGCGGG CGCGACGAGGTGAGCCGCGG
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTEMVDCVVIGAGVVGLAAARASARRGWETVIVESESMIGTGTSSRNSEVIHAGIYYSAGSLKARLCVEGRERLYAFCEE HQVPYRRSGKLIVAAEDAQRGTLAELEAAARANGVTDLRRLSGDQARALEPALRCVAALESPSTGIVDSHALMLALLGDA ERAGAVIAYRSPVIGGQVLHDGGPAIELEVGGAEPMTLRARRVVNAAGLYAQTVAGGLRGLPPESVPRARYAKGNYYSLA GRAPFSRLIYPVPEPGGLGVHLTLDLANQARFGPDVEWIDEIDFRVDPARAARFYDAIRSYWPELPDEALQPAYAGVRPK LAHPPGGGDDFVIQSARAHGVAGLVNLYGIESPGLTASLAIAEQVIAALDDATQ
Sequences:
>Translated_374_residues MTEMVDCVVIGAGVVGLAAARASARRGWETVIVESESMIGTGTSSRNSEVIHAGIYYSAGSLKARLCVEGRERLYAFCEE HQVPYRRSGKLIVAAEDAQRGTLAELEAAARANGVTDLRRLSGDQARALEPALRCVAALESPSTGIVDSHALMLALLGDA ERAGAVIAYRSPVIGGQVLHDGGPAIELEVGGAEPMTLRARRVVNAAGLYAQTVAGGLRGLPPESVPRARYAKGNYYSLA GRAPFSRLIYPVPEPGGLGVHLTLDLANQARFGPDVEWIDEIDFRVDPARAARFYDAIRSYWPELPDEALQPAYAGVRPK LAHPPGGGDDFVIQSARAHGVAGLVNLYGIESPGLTASLAIAEQVIAALDDATQ >Mature_373_residues TEMVDCVVIGAGVVGLAAARASARRGWETVIVESESMIGTGTSSRNSEVIHAGIYYSAGSLKARLCVEGRERLYAFCEEH QVPYRRSGKLIVAAEDAQRGTLAELEAAARANGVTDLRRLSGDQARALEPALRCVAALESPSTGIVDSHALMLALLGDAE RAGAVIAYRSPVIGGQVLHDGGPAIELEVGGAEPMTLRARRVVNAAGLYAQTVAGGLRGLPPESVPRARYAKGNYYSLAG RAPFSRLIYPVPEPGGLGVHLTLDLANQARFGPDVEWIDEIDFRVDPARAARFYDAIRSYWPELPDEALQPAYAGVRPKL AHPPGGGDDFVIQSARAHGVAGLVNLYGIESPGLTASLAIAEQVIAALDDATQ
Specific function: Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate [H]
COG id: COG0579
COG function: function code R; Predicted dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the L2HGDH family [H]
Homologues:
Organism=Homo sapiens, GI13376331, Length=271, Percent_Identity=32.1033210332103, Blast_Score=120, Evalue=2e-27, Organism=Escherichia coli, GI87082148, Length=377, Percent_Identity=27.0557029177719, Blast_Score=108, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17565764, Length=403, Percent_Identity=31.5136476426799, Blast_Score=145, Evalue=5e-35, Organism=Drosophila melanogaster, GI24585081, Length=385, Percent_Identity=30.3896103896104, Blast_Score=145, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015657 - InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: =1.1.3.15 [H]
Molecular weight: Translated: 39516; Mature: 39385
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEMVDCVVIGAGVVGLAAARASARRGWETVIVESESMIGTGTSSRNSEVIHAGIYYSAG CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCEEEEEEEEECC SLKARLCVEGRERLYAFCEEHQVPYRRSGKLIVAAEDAQRGTLAELEAAARANGVTDLRR CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHH LSGDQARALEPALRCVAALESPSTGIVDSHALMLALLGDAERAGAVIAYRSPVIGGQVLH HCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHCCEEEEECCCCCCCEEEE DGGPAIELEVGGAEPMTLRARRVVNAAGLYAQTVAGGLRGLPPESVPRARYAKGNYYSLA CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC GRAPFSRLIYPVPEPGGLGVHLTLDLANQARFGPDVEWIDEIDFRVDPARAARFYDAIRS CCCCHHHCEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCEECHHHHHHHHHHHHH YWPELPDEALQPAYAGVRPKLAHPPGGGDDFVIQSARAHGVAGLVNLYGIESPGLTASLA HCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCEEECCHHCCHHHHHHHEECCCCCCCHHHH IAEQVIAALDDATQ HHHHHHHHHHCCCC >Mature Secondary Structure TEMVDCVVIGAGVVGLAAARASARRGWETVIVESESMIGTGTSSRNSEVIHAGIYYSAG CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCEEEEEEEEECC SLKARLCVEGRERLYAFCEEHQVPYRRSGKLIVAAEDAQRGTLAELEAAARANGVTDLRR CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHH LSGDQARALEPALRCVAALESPSTGIVDSHALMLALLGDAERAGAVIAYRSPVIGGQVLH HCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHCCEEEEECCCCCCCEEEE DGGPAIELEVGGAEPMTLRARRVVNAAGLYAQTVAGGLRGLPPESVPRARYAKGNYYSLA CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC GRAPFSRLIYPVPEPGGLGVHLTLDLANQARFGPDVEWIDEIDFRVDPARAARFYDAIRS CCCCHHHCEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCEECHHHHHHHHHHHHH YWPELPDEALQPAYAGVRPKLAHPPGGGDDFVIQSARAHGVAGLVNLYGIESPGLTASLA HCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCEEECCHHCCHHHHHHHEECCCCCCCHHHH IAEQVIAALDDATQ HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 8297211; 7984428 [H]