Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025544
Identifier: 238025544
GI number: 238025544
Start: 2778697
End: 2780073
Strand: Reverse
Name: 238025544
Synonym: bglu_2g22410
Alternate gene names: NA
Gene position: 2780073-2778697 (Counterclockwise)
Preceding gene: 238025545
Following gene: 238025543
Centisome position: 98.33
GC content: 74.36
Gene sequence:
>1377_bases ATGGACGAATCGCTGATGGGCGCGGTGCGCGCCGCCCGGCGTGCCGGCTCGATCGACTGGCACGGCCACTTCATGCGGCT CGCCGACGAGGCCGACGCGCGGCGCCTGGCCGACGAGACGATCCTGCTCTGGTTCGCCGGCGAGCAGTCCGACTTCGTGC GTTTCAACGCGGCGCGCGTGCGGCAGACCGGCCGCGTGGTGCAGGGCCGCCTGACGGTGCGGCTCGCCTCCGGTGCCCGG CAGGCCGTGCAGACGCAGACGCTGAGCGGCGACTGGGCGGCCGACCGAGCCGAGCTGGGCGAGGCGCTGGCCGCGCTGCG CGAGGCCGTGCGCGACGCCGCCGACGATCCGCATCTGTTGTTCGACACCAGCAGCTGGCGCCACACCACCTGCCGCCAGG GGCGCCTGCCCGATGCCGAGGCGCTGGCCGCGCGCGTGGCCGAATGCGCGCGCGGGCTCGACTTCGTCGGCTTCCATGCC GGCGGCACGGTCGCGCGCGGCTTCGCGTCGTCCACCGGCAGCCGCGGCTGGCACGAGGTCGAGAACTTCAACTTCAGCTG GTCGCTGTACGACTCGAGCGGGCGCGCCATCAAGTCCGTCTACGCAGGCGACGACTGGTGCGACGAGACGTTCGCCGCGA AGCTCGAGGAGGCCGCCGCGCGGCTGCCGGTGCTCGGCCGCACGCCGAAGGCGCTCGCGCCGGGCCGCTACCGCACCTGG TTCGAGCCGGCCGCGGTGCGCGAGATGGTGGACCTGGCCGGCTGGTCGGGCTTCTCGGCGCGCGCCCAGCGCAGCGCGCG CGGCGCGCTGCAGCGGCTCTACGACGGCGAGGTGGCGCTCGATCCGCGGGTATCGATCCGCGAGGACCTGTCGCTCGGCG TGGCGCCCGCGTTCAGCGCCGACGGCTACCGGCGCGAGAGCGTGCCGCTCGTGGTCGACGGGCGCGGCGCCGCGCAGCTG GTCAGCGCGCGCACCGCGCGCGAGCACGGCCTCACGCCGAACGGCGCCGCCCCGGGCGAGGTGCCCGATTCGCTCGCGAT CGCGGGCGGCGACCTCGCCGATGCCGCGGTGCTCGACGCGCTCGGCACGGGCCTGTATGTCGGCAATCTCTGGTATCTGA ACTTCTCCGACCGCGTCCATTGCCGGATGACCGGCATGACGCGCTTCGCGACGTTCTGGGTCGAGGACGGCCGGATCGTG GCGCCCGTCGAGGCGATGCGCTTCGACGACAGCTTCTACGCGCTGTTCGGCAGCGAGCTGGAACGGCTCGGCGCCACTGC GCACCTGCTGCTCGGCGAGGGCACCTATGGCGAGCGCGAGACCGCCGGCGCGAGCGTGCCGGGCCTGCTCGCCCGCCAGT TCGCGCTGACCCTGTGA
Upstream 100 bases:
>100_bases CGCCCTACTGCGGCAAGGGCGAGCCGGCGCAGATCATTCGCGTCGGGCATGCCTCGCCCGCCTGCGTGTTCGCCGACGTC GACGTGTTCGGAGGCGCCTG
Downstream 100 bases:
>100_bases GCGAGCGCACGGCCGCCCCCGCATCGGCGCCGCGCGCGCCGGTGGCGATCCGCGCGCTGCGCGGCGACGACGCCGAGGCG CTGCATGCGCTGCTGTCGCG
Product: Zn-dependent protease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MDESLMGAVRAARRAGSIDWHGHFMRLADEADARRLADETILLWFAGEQSDFVRFNAARVRQTGRVVQGRLTVRLASGAR QAVQTQTLSGDWAADRAELGEALAALREAVRDAADDPHLLFDTSSWRHTTCRQGRLPDAEALAARVAECARGLDFVGFHA GGTVARGFASSTGSRGWHEVENFNFSWSLYDSSGRAIKSVYAGDDWCDETFAAKLEEAAARLPVLGRTPKALAPGRYRTW FEPAAVREMVDLAGWSGFSARAQRSARGALQRLYDGEVALDPRVSIREDLSLGVAPAFSADGYRRESVPLVVDGRGAAQL VSARTAREHGLTPNGAAPGEVPDSLAIAGGDLADAAVLDALGTGLYVGNLWYLNFSDRVHCRMTGMTRFATFWVEDGRIV APVEAMRFDDSFYALFGSELERLGATAHLLLGEGTYGERETAGASVPGLLARQFALTL
Sequences:
>Translated_458_residues MDESLMGAVRAARRAGSIDWHGHFMRLADEADARRLADETILLWFAGEQSDFVRFNAARVRQTGRVVQGRLTVRLASGAR QAVQTQTLSGDWAADRAELGEALAALREAVRDAADDPHLLFDTSSWRHTTCRQGRLPDAEALAARVAECARGLDFVGFHA GGTVARGFASSTGSRGWHEVENFNFSWSLYDSSGRAIKSVYAGDDWCDETFAAKLEEAAARLPVLGRTPKALAPGRYRTW FEPAAVREMVDLAGWSGFSARAQRSARGALQRLYDGEVALDPRVSIREDLSLGVAPAFSADGYRRESVPLVVDGRGAAQL VSARTAREHGLTPNGAAPGEVPDSLAIAGGDLADAAVLDALGTGLYVGNLWYLNFSDRVHCRMTGMTRFATFWVEDGRIV APVEAMRFDDSFYALFGSELERLGATAHLLLGEGTYGERETAGASVPGLLARQFALTL >Mature_458_residues MDESLMGAVRAARRAGSIDWHGHFMRLADEADARRLADETILLWFAGEQSDFVRFNAARVRQTGRVVQGRLTVRLASGAR QAVQTQTLSGDWAADRAELGEALAALREAVRDAADDPHLLFDTSSWRHTTCRQGRLPDAEALAARVAECARGLDFVGFHA GGTVARGFASSTGSRGWHEVENFNFSWSLYDSSGRAIKSVYAGDDWCDETFAAKLEEAAARLPVLGRTPKALAPGRYRTW FEPAAVREMVDLAGWSGFSARAQRSARGALQRLYDGEVALDPRVSIREDLSLGVAPAFSADGYRRESVPLVVDGRGAAQL VSARTAREHGLTPNGAAPGEVPDSLAIAGGDLADAAVLDALGTGLYVGNLWYLNFSDRVHCRMTGMTRFATFWVEDGRIV APVEAMRFDDSFYALFGSELERLGATAHLLLGEGTYGERETAGASVPGLLARQFALTL
Specific function: Unknown
COG id: COG0312
COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49543; Mature: 49543
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDESLMGAVRAARRAGSIDWHGHFMRLADEADARRLADETILLWFAGEQSDFVRFNAARV CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHH RQTGRVVQGRLTVRLASGARQAVQTQTLSGDWAADRAELGEALAALREAVRDAADDPHLL HHHCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE FDTSSWRHTTCRQGRLPDAEALAARVAECARGLDFVGFHAGGTVARGFASSTGSRGWHEV EECCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCHHH ENFNFSWSLYDSSGRAIKSVYAGDDWCDETFAAKLEEAAARLPVLGRTPKALAPGRYRTW HCCCEEEEEECCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC FEPAAVREMVDLAGWSGFSARAQRSARGALQRLYDGEVALDPRVSIREDLSLGVAPAFSA CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCCCCCCCC DGYRRESVPLVVDGRGAAQLVSARTAREHGLTPNGAAPGEVPDSLAIAGGDLADAAVLDA CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH LGTGLYVGNLWYLNFSDRVHCRMTGMTRFATFWVEDGRIVAPVEAMRFDDSFYALFGSEL HHCCEEEEEEEEEECCCCEEEEEECCEEEEEEEEECCEEECCHHHHEECCHHHHHHHHHH ERLGATAHLLLGEGTYGERETAGASVPGLLARQFALTL HHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MDESLMGAVRAARRAGSIDWHGHFMRLADEADARRLADETILLWFAGEQSDFVRFNAARV CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHH RQTGRVVQGRLTVRLASGARQAVQTQTLSGDWAADRAELGEALAALREAVRDAADDPHLL HHHCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE FDTSSWRHTTCRQGRLPDAEALAARVAECARGLDFVGFHAGGTVARGFASSTGSRGWHEV EECCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCHHH ENFNFSWSLYDSSGRAIKSVYAGDDWCDETFAAKLEEAAARLPVLGRTPKALAPGRYRTW HCCCEEEEEECCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC FEPAAVREMVDLAGWSGFSARAQRSARGALQRLYDGEVALDPRVSIREDLSLGVAPAFSA CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCCCCCCCC DGYRRESVPLVVDGRGAAQLVSARTAREHGLTPNGAAPGEVPDSLAIAGGDLADAAVLDA CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH LGTGLYVGNLWYLNFSDRVHCRMTGMTRFATFWVEDGRIVAPVEAMRFDDSFYALFGSEL HHCCEEEEEEEEEECCCCEEEEEECCEEEEEEEEECCEEECCHHHHEECCHHHHHHHHHH ERLGATAHLLLGEGTYGERETAGASVPGLLARQFALTL HHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA