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The map label for this gene is oprD [H]

Identifier: 238025511

GI number: 238025511

Start: 2739112

End: 2740566

Strand: Reverse

Name: oprD [H]

Synonym: bglu_2g22070

Alternate gene names: 238025511

Gene position: 2740566-2739112 (Counterclockwise)

Preceding gene: 238025512

Following gene: 238025507

Centisome position: 96.93

GC content: 68.04

Gene sequence:

>1455_bases
ATGACCCAGATCAGAAACCTGTCGCCCGCATCGCTTGCGGTGCGCCTGGCGTATAGCCTGCCGGTGCTGGCCGGCATGGC
GGCCGCGCCGGCCCTTGCCGACGAGCCGCCGGACGCGTCGCGCGCGCCCGCTCCTGCCGTTGCCGCGCAACCGCCCACCA
TGCCGCCCGCCGTGACCGGCACGGCGGCGAATCAGGCGGGCTCGCCCGTGCCGAGCCCGGACCTGTCGAGCCAGGCGAAG
TCGCAGGGCTTCGTTCGCGACAGCCACTTGCAGCTGATGTTTCGCAACTACGCGGACCTGCTCGACGCCAAGGGCGGCCC
GCATCGCCACGCCTGGGTCCAGGCGCTGATGGCGAACTTCGAGTCGGGCTACACGACGGGGCTGATCGGCTTCGGCGTGG
ACGCGTCGGCCTACGCGGCGCTGAAGCTCGACGGCGGCGCGGGCGGCGGCAACATGGTGCATGTGGCCGACGGCGGCGGC
TCGAACCAGCTCGCCTGGGCCTATCCCGGCCTCTACGACGTGAAGGCGCGGATCTCGAACACCGTGATCAAGTACGGCCT
GCAGATCGTCGACAACCCGTTCATGGAGCCGCACGACAATCGCGCGCTGCCGCCGACCTTTCTCGGCGCGACGATCGTCA
GCAACGAGTTCCGCAACGTGATGCTCGAGGCCGGCAGCTTCACGAAGACCGACGCGCGCGGACGCTCCACGCTGATCGGC
CTGCGCTCGCAATACGGCGGCACGCGCATCGATCGGCTGAGCTACGCCGGCGGCACCTGGGACTACATGCCGGGCGGCAC
GGTGGCGCTCTATGCGAATCAGGCCGAGAACGTCTGGAACCAGTACTACGCGTCGGTGCGGCAGAGCTTCGGCGTGCCCG
CCGGCATCAAGTGGAGCGGCTTCGGCAACGTGTATTCGACGCACGACACCGGCGACGCACGGCAGGGCGGCATCGACAAC
CAGGCCTATAGCCTGTCGCTGGCCGCCCAGCACGGGCCGCATGAACTGCTGCTCGGCTACCAGCAGGTGCTCGGCAACCA
GTTCTTCGATTACCTCGCCGAGACGAACGGCATCTTCCTTGCCGATTCGATGGACGTCGACTACAACGCGCCGCATGAAA
AATCGCTGCAGCTGCGCTACACGTTCTACGGCAAGGACGGCGGCCTGCCCGGCTTCAAGGCGATGGTCTGGGCGCTGACG
GGATGGGGCGCCGACGGCTCGGCGGGCGCGGCGCAGGACCCGACGCACGCGGGCATCTACTGGAAGGACGGCCTGCCGGT
GCAGGGGCGCCACCACGAGTTCGGCTTCATCCCTTCCTACACGATCCAGGGCGGGCGCTTCAAGGACACCCGGATCACCT
TCGTCGCGATGTGGCACGTGGGCTCGGCGCACTACTCGGACAGCACCAATCAGGAATACCGGCTGGTGGTCAATCTGCCG
ATGACGGTGTTCTGA

Upstream 100 bases:

>100_bases
TGCGCGTGTGCCGCCAGGCCGCGCGGGATTGCGCGCGCGCGGCCATGTCCGCGTCGCGGCGGTGGGGCGCGCGCCAATCC
ATCAGAGAGAGAACGTGTAG

Downstream 100 bases:

>100_bases
GCGTCGGCGCAGAGGCGGGCCCGCGGGCCTCGGGCCGCGCGGCTCAGGCCGTCTTCGGCGCCGGCGCGGCCGGGACCGGT
TCGGCCAGCACGATGCCGGC

Product: OprD family outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MTQIRNLSPASLAVRLAYSLPVLAGMAAAPALADEPPDASRAPAPAVAAQPPTMPPAVTGTAANQAGSPVPSPDLSSQAK
SQGFVRDSHLQLMFRNYADLLDAKGGPHRHAWVQALMANFESGYTTGLIGFGVDASAYAALKLDGGAGGGNMVHVADGGG
SNQLAWAYPGLYDVKARISNTVIKYGLQIVDNPFMEPHDNRALPPTFLGATIVSNEFRNVMLEAGSFTKTDARGRSTLIG
LRSQYGGTRIDRLSYAGGTWDYMPGGTVALYANQAENVWNQYYASVRQSFGVPAGIKWSGFGNVYSTHDTGDARQGGIDN
QAYSLSLAAQHGPHELLLGYQQVLGNQFFDYLAETNGIFLADSMDVDYNAPHEKSLQLRYTFYGKDGGLPGFKAMVWALT
GWGADGSAGAAQDPTHAGIYWKDGLPVQGRHHEFGFIPSYTIQGGRFKDTRITFVAMWHVGSAHYSDSTNQEYRLVVNLP
MTVF

Sequences:

>Translated_484_residues
MTQIRNLSPASLAVRLAYSLPVLAGMAAAPALADEPPDASRAPAPAVAAQPPTMPPAVTGTAANQAGSPVPSPDLSSQAK
SQGFVRDSHLQLMFRNYADLLDAKGGPHRHAWVQALMANFESGYTTGLIGFGVDASAYAALKLDGGAGGGNMVHVADGGG
SNQLAWAYPGLYDVKARISNTVIKYGLQIVDNPFMEPHDNRALPPTFLGATIVSNEFRNVMLEAGSFTKTDARGRSTLIG
LRSQYGGTRIDRLSYAGGTWDYMPGGTVALYANQAENVWNQYYASVRQSFGVPAGIKWSGFGNVYSTHDTGDARQGGIDN
QAYSLSLAAQHGPHELLLGYQQVLGNQFFDYLAETNGIFLADSMDVDYNAPHEKSLQLRYTFYGKDGGLPGFKAMVWALT
GWGADGSAGAAQDPTHAGIYWKDGLPVQGRHHEFGFIPSYTIQGGRFKDTRITFVAMWHVGSAHYSDSTNQEYRLVVNLP
MTVF
>Mature_483_residues
TQIRNLSPASLAVRLAYSLPVLAGMAAAPALADEPPDASRAPAPAVAAQPPTMPPAVTGTAANQAGSPVPSPDLSSQAKS
QGFVRDSHLQLMFRNYADLLDAKGGPHRHAWVQALMANFESGYTTGLIGFGVDASAYAALKLDGGAGGGNMVHVADGGGS
NQLAWAYPGLYDVKARISNTVIKYGLQIVDNPFMEPHDNRALPPTFLGATIVSNEFRNVMLEAGSFTKTDARGRSTLIGL
RSQYGGTRIDRLSYAGGTWDYMPGGTVALYANQAENVWNQYYASVRQSFGVPAGIKWSGFGNVYSTHDTGDARQGGIDNQ
AYSLSLAAQHGPHELLLGYQQVLGNQFFDYLAETNGIFLADSMDVDYNAPHEKSLQLRYTFYGKDGGLPGFKAMVWALTG
WGADGSAGAAQDPTHAGIYWKDGLPVQGRHHEFGFIPSYTIQGGRFKDTRITFVAMWHVGSAHYSDSTNQEYRLVVNLPM
TVF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 51902; Mature: 51770

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIRNLSPASLAVRLAYSLPVLAGMAAAPALADEPPDASRAPAPAVAAQPPTMPPAVTG
CCCCCCCCHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAANQAGSPVPSPDLSSQAKSQGFVRDSHLQLMFRNYADLLDAKGGPHRHAWVQALMANF
CCCCCCCCCCCCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ESGYTTGLIGFGVDASAYAALKLDGGAGGGNMVHVADGGGSNQLAWAYPGLYDVKARISN
CCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHHH
TVIKYGLQIVDNPFMEPHDNRALPPTFLGATIVSNEFRNVMLEAGSFTKTDARGRSTLIG
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEE
LRSQYGGTRIDRLSYAGGTWDYMPGGTVALYANQAENVWNQYYASVRQSFGVPAGIKWSG
EHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECC
FGNVYSTHDTGDARQGGIDNQAYSLSLAAQHGPHELLLGYQQVLGNQFFDYLAETNGIFL
CCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
ADSMDVDYNAPHEKSLQLRYTFYGKDGGLPGFKAMVWALTGWGADGSAGAAQDPTHAGIY
EECCCCCCCCCCCCCEEEEEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCEE
WKDGLPVQGRHHEFGFIPSYTIQGGRFKDTRITFVAMWHVGSAHYSDSTNQEYRLVVNLP
ECCCCCCCCCCCCCCCCCCEEECCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEECC
MTVF
CCCC
>Mature Secondary Structure 
TQIRNLSPASLAVRLAYSLPVLAGMAAAPALADEPPDASRAPAPAVAAQPPTMPPAVTG
CCCCCCCHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAANQAGSPVPSPDLSSQAKSQGFVRDSHLQLMFRNYADLLDAKGGPHRHAWVQALMANF
CCCCCCCCCCCCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ESGYTTGLIGFGVDASAYAALKLDGGAGGGNMVHVADGGGSNQLAWAYPGLYDVKARISN
CCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHHH
TVIKYGLQIVDNPFMEPHDNRALPPTFLGATIVSNEFRNVMLEAGSFTKTDARGRSTLIG
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEE
LRSQYGGTRIDRLSYAGGTWDYMPGGTVALYANQAENVWNQYYASVRQSFGVPAGIKWSG
EHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECC
FGNVYSTHDTGDARQGGIDNQAYSLSLAAQHGPHELLLGYQQVLGNQFFDYLAETNGIFL
CCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
ADSMDVDYNAPHEKSLQLRYTFYGKDGGLPGFKAMVWALTGWGADGSAGAAQDPTHAGIY
EECCCCCCCCCCCCCEEEEEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCEE
WKDGLPVQGRHHEFGFIPSYTIQGGRFKDTRITFVAMWHVGSAHYSDSTNQEYRLVVNLP
ECCCCCCCCCCCCCCCCCCEEECCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEECC
MTVF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]