Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025415
Identifier: 238025415
GI number: 238025415
Start: 2604382
End: 2605623
Strand: Reverse
Name: 238025415
Synonym: bglu_2g21040
Alternate gene names: NA
Gene position: 2605623-2604382 (Counterclockwise)
Preceding gene: 238025416
Following gene: 238025413
Centisome position: 92.16
GC content: 73.99
Gene sequence:
>1242_bases ATGTCCGCCGTTCAACCCACCGGGCGGGCCCGGCACGCGCTCGAAGCGCTGAATTTCTTCATGGCCGACGTGCAGGCCGG GCTCGGCCCGTTCCTCGGCGTGTTCCTGCAGGCGCAGGGCTGGCGGGCCGACGCGATCGGCACGGTGATGACGCTCGGCG GCATCGCCGGCATGCTCGCGACCTCGCCGGCCGGCGCGCTGGTGGACGCGAGCCGCCGCAAGCGCGGCATCATCGTCGTG GCGGCCGTGTTGACCACGCTCGCCTCGCTCGTGCTGTGGTTCTCGCAGCGCGGCTGGGTGGTGGCCGTATCGCAGGTGTT TACCGCGCTGACCGGCGCCGTGCTCGGCCCGGCCGTGATGGGCGTGACGCTCGGCATGGTGCGCGAAGGCGGCTTCGACC GGCAGTTCGGGCGCAACCAGATGGCCAATCACGCAGGCAACGTCGTCGGCGCGGCGCTGTCGGGCTGGCTCGGCTGGCAC TTCGGCTTCGCCGCGGTGTTCTTGCTGGCGGGGGTGTTCGGCGTGCTGACGGTGGGCGCCACGCTGCTCGTGCCGGGCGG GGCGATCGATCACGACAGCGCGCGGGGGCTCGGCGCGACGCATGCCCCGGCCGGCGGCGCGCGCGTGCTGCTCGGCAACC GCTCGCTGCTGCTGCTCGCGGCGGCGCTCGCGCTGTTCCATCTCGGCAACGCGGCGATGCTGCCGCTTTACAGCCTCGCG GTGGTTGCGGCACACGCGAGCAACCCGAGCGCGCTGGCCGCGCAGACCATCGTGGTCGCCCAACTGGTGATGGTGGCCGC GGCCTGGGTCGCGCCATCGCTGATCCGGCGCCTCGGATACTGGAACGTGGTGCTGCTCGCGTTTCTCGCGCTGCCGCTGC GCGGCGCGCTCGCGGCCACCTTCATCACGGCGTGGGGCGTCTGGCCGGTGCAGGTGCTCGACGGCATCGGCGCCGGGCTC CTGGGGGTGGCCGTGCCGGCGCTCGTCGTGCGGCTGCTGCGCGGCAGCGGGCGCATGAATGCCGGGCAGGGCATGGTCAT GACGGTGCAGGGCGTCGGCGCGGCGCTGAGCCCCGCGCTGGGCGGCATCGTCGCGCAACACTTCGGCTACGCCGCCGCGT TCGTCACGCTCGGCGCGGTGTCCACCGGCTCGCTCGCGCTGTGGCTCGGTTTCGGCGCCACGCTGCGGCGGGCTTGCAGC CCGAGCGGCGCGGCGCCCGCCGATGCGTCGCCAACGGCGTGA
Upstream 100 bases:
>100_bases GGGGCGCACGTGCAGGCCTGGGGGCGCGGCGTCAGCACCCGGCGCGGCCGGACCATCGACGTCGACGAGATCGCGGAACT GATCGACGCGCAGGACTGAC
Downstream 100 bases:
>100_bases AGCGGCGGCGGGGCGGCGCCGCGCGCCGCGTTGCATCGGCGCCATGCCGGCCCGCCGCCAGCGGCGCGTGATGGCGCCGG GCACGCGCATCGTGCGCATC
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MSAVQPTGRARHALEALNFFMADVQAGLGPFLGVFLQAQGWRADAIGTVMTLGGIAGMLATSPAGALVDASRRKRGIIVV AAVLTTLASLVLWFSQRGWVVAVSQVFTALTGAVLGPAVMGVTLGMVREGGFDRQFGRNQMANHAGNVVGAALSGWLGWH FGFAAVFLLAGVFGVLTVGATLLVPGGAIDHDSARGLGATHAPAGGARVLLGNRSLLLLAAALALFHLGNAAMLPLYSLA VVAAHASNPSALAAQTIVVAQLVMVAAAWVAPSLIRRLGYWNVVLLAFLALPLRGALAATFITAWGVWPVQVLDGIGAGL LGVAVPALVVRLLRGSGRMNAGQGMVMTVQGVGAALSPALGGIVAQHFGYAAAFVTLGAVSTGSLALWLGFGATLRRACS PSGAAPADASPTA
Sequences:
>Translated_413_residues MSAVQPTGRARHALEALNFFMADVQAGLGPFLGVFLQAQGWRADAIGTVMTLGGIAGMLATSPAGALVDASRRKRGIIVV AAVLTTLASLVLWFSQRGWVVAVSQVFTALTGAVLGPAVMGVTLGMVREGGFDRQFGRNQMANHAGNVVGAALSGWLGWH FGFAAVFLLAGVFGVLTVGATLLVPGGAIDHDSARGLGATHAPAGGARVLLGNRSLLLLAAALALFHLGNAAMLPLYSLA VVAAHASNPSALAAQTIVVAQLVMVAAAWVAPSLIRRLGYWNVVLLAFLALPLRGALAATFITAWGVWPVQVLDGIGAGL LGVAVPALVVRLLRGSGRMNAGQGMVMTVQGVGAALSPALGGIVAQHFGYAAAFVTLGAVSTGSLALWLGFGATLRRACS PSGAAPADASPTA >Mature_412_residues SAVQPTGRARHALEALNFFMADVQAGLGPFLGVFLQAQGWRADAIGTVMTLGGIAGMLATSPAGALVDASRRKRGIIVVA AVLTTLASLVLWFSQRGWVVAVSQVFTALTGAVLGPAVMGVTLGMVREGGFDRQFGRNQMANHAGNVVGAALSGWLGWHF GFAAVFLLAGVFGVLTVGATLLVPGGAIDHDSARGLGATHAPAGGARVLLGNRSLLLLAAALALFHLGNAAMLPLYSLAV VAAHASNPSALAAQTIVVAQLVMVAAAWVAPSLIRRLGYWNVVLLAFLALPLRGALAATFITAWGVWPVQVLDGIGAGLL GVAVPALVVRLLRGSGRMNAGQGMVMTVQGVGAALSPALGGIVAQHFGYAAAFVTLGAVSTGSLALWLGFGATLRRACSP SGAAPADASPTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41684; Mature: 41552
Theoretical pI: Translated: 12.11; Mature: 12.11
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVQPTGRARHALEALNFFMADVQAGLGPFLGVFLQAQGWRADAIGTVMTLGGIAGMLA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH TSPAGALVDASRRKRGIIVVAAVLTTLASLVLWFSQRGWVVAVSQVFTALTGAVLGPAVM CCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH GVTLGMVREGGFDRQFGRNQMANHAGNVVGAALSGWLGWHFGFAAVFLLAGVFGVLTVGA HHHHHHHHCCCCCHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH TLLVPGGAIDHDSARGLGATHAPAGGARVLLGNRSLLLLAAALALFHLGNAAMLPLYSLA HHEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHH VVAAHASNPSALAAQTIVVAQLVMVAAAWVAPSLIRRLGYWNVVLLAFLALPLRGALAAT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FITAWGVWPVQVLDGIGAGLLGVAVPALVVRLLRGSGRMNAGQGMVMTVQGVGAALSPAL HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHH GGIVAQHFGYAAAFVTLGAVSTGSLALWLGFGATLRRACSPSGAAPADASPTA HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SAVQPTGRARHALEALNFFMADVQAGLGPFLGVFLQAQGWRADAIGTVMTLGGIAGMLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH TSPAGALVDASRRKRGIIVVAAVLTTLASLVLWFSQRGWVVAVSQVFTALTGAVLGPAVM CCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH GVTLGMVREGGFDRQFGRNQMANHAGNVVGAALSGWLGWHFGFAAVFLLAGVFGVLTVGA HHHHHHHHCCCCCHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH TLLVPGGAIDHDSARGLGATHAPAGGARVLLGNRSLLLLAAALALFHLGNAAMLPLYSLA HHEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHH VVAAHASNPSALAAQTIVVAQLVMVAAAWVAPSLIRRLGYWNVVLLAFLALPLRGALAAT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FITAWGVWPVQVLDGIGAGLLGVAVPALVVRLLRGSGRMNAGQGMVMTVQGVGAALSPAL HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHH GGIVAQHFGYAAAFVTLGAVSTGSLALWLGFGATLRRACSPSGAAPADASPTA HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]