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The map label for this gene is ltrA [H]

Identifier: 238025413

GI number: 238025413

Start: 2601994

End: 2602911

Strand: Reverse

Name: ltrA [H]

Synonym: bglu_2g21020

Alternate gene names: 238025413

Gene position: 2602911-2601994 (Counterclockwise)

Preceding gene: 238025415

Following gene: 238025412

Centisome position: 92.06

GC content: 70.92

Gene sequence:

>918_bases
ATGTCGAAGCTGCCTGATTTCGAGGGACTCGCGATGTTCGCCAAGGTGGCGGAGGAGGGTTCGTTCGCCGCGGCGGCGCG
CGAGATGGGGGTGTCGGTGGCCACCGTGTCGCGTGGCGTGGCGCGGCTGGAGGACCGGCTCGGCGCGCGCCTTTTCAATC
GCACCTCGCGCCAGCTTGCGCTGACGGAGTTCGGCAGGGCGCTCTGCGAGAAGGCCGGCGAGATCTACCGGCAGGCCGAG
GCGGTCGAGGGGGCGGCGCGCGAGCTGTCGGTGCAGCCGCGCGGGCTGGTGCGGCTGGCCGTGCCGATGTCGTTCGGGCT
GCGCTGGGTCGCGCCGCTGATGCCGGGCTTCTTTCGTCTATATCCGCAGGTGTCGGTCGATCTGCATCTGGCCGATGCCA
CCGTCGATCTGGTCGCCGAGGGCTTCGACGCGGCGCTGCGCATCGCCGCGCTGCCCGATTCGTCGCTGGTCGCGCGGCGC
CTGTGCGCGGTCACGCAGTATCTGGTGGCCTCGCCCGGCTATCTCGCCCGCGAGGGGCGCCCCTCGCATCCGCGCGAGCT
GAACGGGCGCGCCTGCCTGTCCTATGCCTATCGCGCGCACAGCGACGTCTGGCGCTTCACCAACCAGGCCGGCGACGAAG
AGCCGGTGATGCCGGCCGGCCCGCTGCGCGTGACGAATTCGGATGCCTTGCTGCCGATGCTGCTCGAAGGGCTCGCGATC
GCCGAGCTGCCCGAGTTCATCGCGAGCGAGTATCTGGCCGACGGCCGGCTCGAGGCGATTCTCACCGACTGGTCGCTCAC
GCGCGGCGGCCTTTACTTCGTCACGCCTTCGGCGCGCGCGCGGCCCGCCAAGGTCAGCGCGCTGTCCGACTACTTCGCCG
AGCACCTGAGCGAGCCGGCCTGGCGCTGGCCGAAATGA

Upstream 100 bases:

>100_bases
CCGTGTGCTGCTGCGATGTAGGGAGAATATCGACCTGCTTATCTTTTCGAAATAGAATGCATTGCAAACCAGCATTGCAT
TTTTGAAATGATGAGCGCCG

Downstream 100 bases:

>100_bases
CGGCGGGCGGCGGCCGGCACCTGCCGGTCGTGCGGAGCCAGCGCATCGCTGCTGCCGGCCGCCGGCTCATTTCGGAGCCG
CCGCGATGCGGTCGCGTTCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSKLPDFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFGRALCEKAGEIYRQAE
AVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVSVDLHLADATVDLVAEGFDAALRIAALPDSSLVARR
LCAVTQYLVASPGYLAREGRPSHPRELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMPAGPLRVTNSDALLPMLLEGLAI
AELPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPAWRWPK

Sequences:

>Translated_305_residues
MSKLPDFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFGRALCEKAGEIYRQAE
AVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVSVDLHLADATVDLVAEGFDAALRIAALPDSSLVARR
LCAVTQYLVASPGYLAREGRPSHPRELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMPAGPLRVTNSDALLPMLLEGLAI
AELPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPAWRWPK
>Mature_304_residues
SKLPDFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFGRALCEKAGEIYRQAEA
VEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVSVDLHLADATVDLVAEGFDAALRIAALPDSSLVARRL
CAVTQYLVASPGYLAREGRPSHPRELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMPAGPLRVTNSDALLPMLLEGLAIA
ELPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPAWRWPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=31.0580204778157, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.0819112627986, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=30.4498269896194, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=33, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=28.8135593220339, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.8256227758007, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=25.3571428571429, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790011, Length=272, Percent_Identity=27.5735294117647, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790262, Length=242, Percent_Identity=28.9256198347107, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=33.6206896551724, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=29.0697674418605, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=25.6849315068493, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33353; Mature: 33221

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLPDFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLA
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEFGRALCEKAGEIYRQAEAVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
YPQVSVDLHLADATVDLVAEGFDAALRIAALPDSSLVARRLCAVTQYLVASPGYLAREGR
CCCCEEEEEECHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PSHPRELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMPAGPLRVTNSDALLPMLLEGLAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
AELPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPA
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
WRWPK
CCCCC
>Mature Secondary Structure 
SKLPDFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLA
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEFGRALCEKAGEIYRQAEAVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
YPQVSVDLHLADATVDLVAEGFDAALRIAALPDSSLVARRLCAVTQYLVASPGYLAREGR
CCCCEEEEEECHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PSHPRELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMPAGPLRVTNSDALLPMLLEGLAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
AELPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPA
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
WRWPK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]