Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is frc [H]
Identifier: 238025267
GI number: 238025267
Start: 2411577
End: 2412992
Strand: Reverse
Name: frc [H]
Synonym: bglu_2g19390
Alternate gene names: 238025267
Gene position: 2412992-2411577 (Counterclockwise)
Preceding gene: 238025268
Following gene: 238025266
Centisome position: 85.35
GC content: 72.95
Gene sequence:
>1416_bases ATGTCTGAACTGAATTCGAACCCTGCCCTGGAGGAGACCTCCGTGGCCCGCACCCGGGCTTGCCTCGGCGAGATCTGGAG CGCGCTGGGCGGCGCGCCGGACGGCCTGAGCGAGGTCGGTTTCAAGGGGCACGGCGTGCTGCCGTCGGCCTTTCACGTGA CGGATTTCGCGTCGGCCAGCATCGCGGCGGCGGCTCACGCGGTTGCCGAACTGATCGGGCAGGCGCACGGCGCGCGGCCG GCGGTGGAGGTCGATCGCCGCTACGCCTCGCTGTGGTTCCAGACCTCGCTGCGTCCGCAAGGCTGGCAGATGCCGCCGCA GTGGGACGTGATCGCCGGTGATTATCGGACCGCCGACGGCTGGATTCGCCTGCATACCAATGCGCCGCATCATCGCGACG CGGCGCTCGCGGTGCTGGGCACGCCGCTCGACAAGGACGCCGTGGCCCGCGAGGTGGCGCGCTGGAAGTCGGACGAGCTG GAAAGCGCGGTGGTGTCGCAACACGGCTGCGCCGCGGCGCTGCACACCCAGGCCCAGTGGGCCGAGCATCCGCAGGGCCG GGCCGTGCAGGCCGAGCCGCTGCTGATCCACGACGCGGTGGGGGCCGATGCGCCCCGGGCGCGCTGGCAGATTCCCGCCG CCCGCCCGCTGCATGAGGTGCGGGTCCTCGACCTCACGCGCATTCTGGCGGGGCCGGTGGCCACGCGGTTTCTCGCCGGC TATGGCGCCAATGTGCTGCGCATCGATCCGTTCGGCTGGGAAGAGCCCAACAATGTGCCGGAAGTGGTGCTGGGCAAGCG TTGCGCGCGCCTCGACTTCAAGTCGCGGGACGGCCTCGCCATGCTGCGCCGGTTGATCGGCGAGGCCGACGTGCTGGTGC ACGGCTACCGGCCCGGCGCGCTCGAGCGGCTCGGCCTCGATGCCGATGAACGGCGCCGCCTCAACCCGGGGCTGGTGGAC GTGTCGCTCGACGCCTACGGATGGAGCGGCGCATGGCGCGACCGGCGCGGTTTCGACAGCCTGGTGCAGATCAGCACCGG CATCGCGGCCACCGGCATGCGCGAGGCCGGCGCCGAGCGTCCGGTGCCGCTGCCCAGCCAGGCGCTCGATCACGGCACCG GCTACCTGCTGGCCGCCGCCGCGGTGCGCGGCCTCACCCAGCGGCTGAGAACCGGGGCGGGCTCGCGGACTCGCGGCTCA CTGGCGCGCACCGCGCTGCTGCTGACCTCGCAGGGCATCCAGGACCGGGCCCAGCCGCTGATCGCGCCGGAAACCGAGGC CGATCTGGACGACTGGGTCGAGCACACGAGCTGGGGCGCGGCGCGCCGTGTGCGGGCGCCGGCGCAGGTGTTGGGCGCGG CCATGCGCTGGGACCATCCCTCCTGCGACCTCGGCTCCTCGCCGGTGGCGTGGTAG
Upstream 100 bases:
>100_bases TCTTGACGTCGTTGCCGCATGCCGGATGCGAGCCGGCACGGATGCGCAGGTAGCGCCGTGCCGCCGCTTCGGGCGCCCAC TTTCATCGAGAAGACGATCC
Downstream 100 bases:
>100_bases GGCGTGCGTTGCGATCGGCAGGCCTCAATCGCAGGCAGTAAACGGCAAACAGCAAAGGAGCAGGACCATGAGTGAGACGG TGGTGGTGAGCGGTGGCGGT
Product: CAIB/BAIF family protein CoA transferase
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSELNSNPALEETSVARTRACLGEIWSALGGAPDGLSEVGFKGHGVLPSAFHVTDFASASIAAAAHAVAELIGQAHGARP AVEVDRRYASLWFQTSLRPQGWQMPPQWDVIAGDYRTADGWIRLHTNAPHHRDAALAVLGTPLDKDAVAREVARWKSDEL ESAVVSQHGCAAALHTQAQWAEHPQGRAVQAEPLLIHDAVGADAPRARWQIPAARPLHEVRVLDLTRILAGPVATRFLAG YGANVLRIDPFGWEEPNNVPEVVLGKRCARLDFKSRDGLAMLRRLIGEADVLVHGYRPGALERLGLDADERRRLNPGLVD VSLDAYGWSGAWRDRRGFDSLVQISTGIAATGMREAGAERPVPLPSQALDHGTGYLLAAAAVRGLTQRLRTGAGSRTRGS LARTALLLTSQGIQDRAQPLIAPETEADLDDWVEHTSWGAARRVRAPAQVLGAAMRWDHPSCDLGSSPVAW
Sequences:
>Translated_471_residues MSELNSNPALEETSVARTRACLGEIWSALGGAPDGLSEVGFKGHGVLPSAFHVTDFASASIAAAAHAVAELIGQAHGARP AVEVDRRYASLWFQTSLRPQGWQMPPQWDVIAGDYRTADGWIRLHTNAPHHRDAALAVLGTPLDKDAVAREVARWKSDEL ESAVVSQHGCAAALHTQAQWAEHPQGRAVQAEPLLIHDAVGADAPRARWQIPAARPLHEVRVLDLTRILAGPVATRFLAG YGANVLRIDPFGWEEPNNVPEVVLGKRCARLDFKSRDGLAMLRRLIGEADVLVHGYRPGALERLGLDADERRRLNPGLVD VSLDAYGWSGAWRDRRGFDSLVQISTGIAATGMREAGAERPVPLPSQALDHGTGYLLAAAAVRGLTQRLRTGAGSRTRGS LARTALLLTSQGIQDRAQPLIAPETEADLDDWVEHTSWGAARRVRAPAQVLGAAMRWDHPSCDLGSSPVAW >Mature_470_residues SELNSNPALEETSVARTRACLGEIWSALGGAPDGLSEVGFKGHGVLPSAFHVTDFASASIAAAAHAVAELIGQAHGARPA VEVDRRYASLWFQTSLRPQGWQMPPQWDVIAGDYRTADGWIRLHTNAPHHRDAALAVLGTPLDKDAVAREVARWKSDELE SAVVSQHGCAAALHTQAQWAEHPQGRAVQAEPLLIHDAVGADAPRARWQIPAARPLHEVRVLDLTRILAGPVATRFLAGY GANVLRIDPFGWEEPNNVPEVVLGKRCARLDFKSRDGLAMLRRLIGEADVLVHGYRPGALERLGLDADERRRLNPGLVDV SLDAYGWSGAWRDRRGFDSLVQISTGIAATGMREAGAERPVPLPSQALDHGTGYLLAAAAVRGLTQRLRTGAGSRTRGSL ARTALLLTSQGIQDRAQPLIAPETEADLDDWVEHTSWGAARRVRAPAQVLGAAMRWDHPSCDLGSSPVAW
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863124, Length=204, Percent_Identity=29.9019607843137, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI300863128, Length=204, Percent_Identity=29.9019607843137, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI300863126, Length=310, Percent_Identity=25.4838709677419, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI266456254, Length=194, Percent_Identity=31.4432989690722, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI42794625, Length=194, Percent_Identity=31.4432989690722, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI266458393, Length=194, Percent_Identity=30.9278350515464, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI266458397, Length=194, Percent_Identity=30.9278350515464, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI266458395, Length=123, Percent_Identity=35.7723577235772, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI42822893, Length=116, Percent_Identity=36.2068965517241, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1788717, Length=218, Percent_Identity=27.5229357798165, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87082093, Length=212, Percent_Identity=25.4716981132075, Blast_Score=83, Evalue=4e-17, Organism=Caenorhabditis elegans, GI32564160, Length=168, Percent_Identity=29.7619047619048, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24648431, Length=197, Percent_Identity=35.5329949238579, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24585488, Length=197, Percent_Identity=30.4568527918782, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 50789; Mature: 50658
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELNSNPALEETSVARTRACLGEIWSALGGAPDGLSEVGFKGHGVLPSAFHVTDFASAS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH IAAAAHAVAELIGQAHGARPAVEVDRRYASLWFQTSLRPQGWQMPPQWDVIAGDYRTADG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEECCC WIRLHTNAPHHRDAALAVLGTPLDKDAVAREVARWKSDELESAVVSQHGCAAALHTQAQW EEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHH AEHPQGRAVQAEPLLIHDAVGADAPRARWQIPAARPLHEVRVLDLTRILAGPVATRFLAG HCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YGANVLRIDPFGWEEPNNVPEVVLGKRCARLDFKSRDGLAMLRRLIGEADVLVHGYRPGA CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCH LERLGLDADERRRLNPGLVDVSLDAYGWSGAWRDRRGFDSLVQISTGIAATGMREAGAER HHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHCCHHHCCCCC PVPLPSQALDHGTGYLLAAAAVRGLTQRLRTGAGSRTRGSLARTALLLTSQGIQDRAQPL CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHCCCC IAPETEADLDDWVEHTSWGAARRVRAPAQVLGAAMRWDHPSCDLGSSPVAW CCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SELNSNPALEETSVARTRACLGEIWSALGGAPDGLSEVGFKGHGVLPSAFHVTDFASAS CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH IAAAAHAVAELIGQAHGARPAVEVDRRYASLWFQTSLRPQGWQMPPQWDVIAGDYRTADG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEECCC WIRLHTNAPHHRDAALAVLGTPLDKDAVAREVARWKSDELESAVVSQHGCAAALHTQAQW EEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHH AEHPQGRAVQAEPLLIHDAVGADAPRARWQIPAARPLHEVRVLDLTRILAGPVATRFLAG HCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YGANVLRIDPFGWEEPNNVPEVVLGKRCARLDFKSRDGLAMLRRLIGEADVLVHGYRPGA CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCH LERLGLDADERRRLNPGLVDVSLDAYGWSGAWRDRRGFDSLVQISTGIAATGMREAGAER HHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHCCHHHCCCCC PVPLPSQALDHGTGYLLAAAAVRGLTQRLRTGAGSRTRGSLARTALLLTSQGIQDRAQPL CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHCCCC IAPETEADLDDWVEHTSWGAARRVRAPAQVLGAAMRWDHPSCDLGSSPVAW CCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA