Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yurR [H]
Identifier: 238025203
GI number: 238025203
Start: 2335444
End: 2336616
Strand: Reverse
Name: yurR [H]
Synonym: bglu_2g18740
Alternate gene names: 238025203
Gene position: 2336616-2335444 (Counterclockwise)
Preceding gene: 238025204
Following gene: 238025202
Centisome position: 82.64
GC content: 71.27
Gene sequence:
>1173_bases ATGAGTTCCCGCATCGTTGTCGTCGGCGGCGGCGTGATCGGCAGCGCGACCGCGTATTTCCTGCGGGCCTCGGACCCGAG CGCGTCGGTCACCGTGATCGAGCGCGACCCGACCTACGCGCGCTCGTCGTCGGCGCTGTCGGCCGCCTCGATCCGGCAGC AGTTCTCCACGCCGCTGTCGATCCGCATGTCGCTGTTCGGCATCACGTTCCTGCGCGAACTCGGCGAACGGCTCGCGGTC GGCGGCGAGCGCCCGTCGATCGGCCTGCACGAGGGCGGCTATCTGTTCCTTGCCACGCCGGCCGGCGAGGCCACGCTGCG CGAGAACCACGCGCTGCAGCTGGCCGAGGGCGCGCAGATCCGGCTCATGGCGCCCGACGCACTGCGCGCGCGATTTCCCT GGCTCAACGTCGACGATCTCGCCGCGGGCGCCTACGGCGAGCGCGGCGAGGGCTGGTTCGACGGCTACGGGCTGGTGCAG GCGCTGCGCAGGAAGGCACAGTCGCTCGGCGCGCGCTACCTGGCCGCCGAGGTGGTGGGGCTGGTGCGCGAGGGGCGCCG CATCACGCAGGTCGTCACGGCCGACGGCGAGCGCCATCCGTGCGATACCGTGGTCAACGCGGCCGGCGCCTGGGCGAAGC GGATCGCGGCGCTGGCCGGCATCGAGCTCCCGGTTCACGCACGGCGCCGCAGCATCTTCAACGTGTCGTCGCCGGCCCGG CTCGGCGCCTGCCCGCTGCTGGTCGATCCGGGCGGCGTGTATTTCCGTCCCGAGGGGCGCACCTACCTTTGCGGCAGCTC GCCGTCGCCCGCGCACGACGCCGACGACCTGCCGCTCGACGAGGTCGATCACGCGCTGTTCGACGAGGTGATCTGGCCGG CGCTCGCGCATCGCGTGCCGGGCTTCGAGGCGCTGCGCGTGGAGCGCAGCTGGTCCGGCTACTACGAGTACAACGTGTTC GATCACAACGCGATCATCGGCTACCACCCCGAACTCGAGAACTGCGTGTTCGCCAATGGCTTCAGCGGGCACGGCCTGCA GCAGGGGCCGGCCACCGGGCGCGGCGTGAGCGAGCTGATCCTGAACGGGCGCTACACCTCGCTCGATCTGTCCGAACTCG ACTGGCGGCGCGTGCTGGAGCGGCGCCCGATCGTCGAGAAGAACGTGGTGTAA
Upstream 100 bases:
>100_bases TCAACTACTCGTCGGCGCTGCCGCTCGCGCAGGGCATCGACTTCAACCTCGGCTGAGCGCGAGGCACGCGCGCCTGGCTG ACCCCGGCAATGGAGCCTCC
Downstream 100 bases:
>100_bases CGGGAGCGCGGGCGATGATGTATGACTTCACCATGCCGTTTCGCGAGCCGGCCGGCTCGCCGATTCGCGAACTGTTCAAG TACCTCGGCCAGCCGGGGAT
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MSSRIVVVGGGVIGSATAYFLRASDPSASVTVIERDPTYARSSSALSAASIRQQFSTPLSIRMSLFGITFLRELGERLAV GGERPSIGLHEGGYLFLATPAGEATLRENHALQLAEGAQIRLMAPDALRARFPWLNVDDLAAGAYGERGEGWFDGYGLVQ ALRRKAQSLGARYLAAEVVGLVREGRRITQVVTADGERHPCDTVVNAAGAWAKRIAALAGIELPVHARRRSIFNVSSPAR LGACPLLVDPGGVYFRPEGRTYLCGSSPSPAHDADDLPLDEVDHALFDEVIWPALAHRVPGFEALRVERSWSGYYEYNVF DHNAIIGYHPELENCVFANGFSGHGLQQGPATGRGVSELILNGRYTSLDLSELDWRRVLERRPIVEKNVV
Sequences:
>Translated_390_residues MSSRIVVVGGGVIGSATAYFLRASDPSASVTVIERDPTYARSSSALSAASIRQQFSTPLSIRMSLFGITFLRELGERLAV GGERPSIGLHEGGYLFLATPAGEATLRENHALQLAEGAQIRLMAPDALRARFPWLNVDDLAAGAYGERGEGWFDGYGLVQ ALRRKAQSLGARYLAAEVVGLVREGRRITQVVTADGERHPCDTVVNAAGAWAKRIAALAGIELPVHARRRSIFNVSSPAR LGACPLLVDPGGVYFRPEGRTYLCGSSPSPAHDADDLPLDEVDHALFDEVIWPALAHRVPGFEALRVERSWSGYYEYNVF DHNAIIGYHPELENCVFANGFSGHGLQQGPATGRGVSELILNGRYTSLDLSELDWRRVLERRPIVEKNVV >Mature_389_residues SSRIVVVGGGVIGSATAYFLRASDPSASVTVIERDPTYARSSSALSAASIRQQFSTPLSIRMSLFGITFLRELGERLAVG GERPSIGLHEGGYLFLATPAGEATLRENHALQLAEGAQIRLMAPDALRARFPWLNVDDLAAGAYGERGEGWFDGYGLVQA LRRKAQSLGARYLAAEVVGLVREGRRITQVVTADGERHPCDTVVNAAGAWAKRIAALAGIELPVHARRRSIFNVSSPARL GACPLLVDPGGVYFRPEGRTYLCGSSPSPAHDADDLPLDEVDHALFDEVIWPALAHRVPGFEALRVERSWSGYYEYNVFD HNAIIGYHPELENCVFANGFSGHGLQQGPATGRGVSELILNGRYTSLDLSELDWRRVLERRPIVEKNVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI8923708, Length=413, Percent_Identity=41.1622276029056, Blast_Score=303, Evalue=3e-82, Organism=Homo sapiens, GI197927446, Length=398, Percent_Identity=26.8844221105528, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI21361378, Length=398, Percent_Identity=26.8844221105528, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI24797151, Length=400, Percent_Identity=25.25, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17541536, Length=431, Percent_Identity=35.0348027842227, Blast_Score=249, Evalue=2e-66, Organism=Drosophila melanogaster, GI20129729, Length=415, Percent_Identity=39.2771084337349, Blast_Score=279, Evalue=2e-75, Organism=Drosophila melanogaster, GI17985989, Length=409, Percent_Identity=33.9853300733496, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI28571104, Length=397, Percent_Identity=25.4408060453401, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: NA
Molecular weight: Translated: 42361; Mature: 42230
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRIVVVGGGVIGSATAYFLRASDPSASVTVIERDPTYARSSSALSAASIRQQFSTPLS CCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHH IRMSLFGITFLRELGERLAVGGERPSIGLHEGGYLFLATPAGEATLRENHALQLAEGAQI HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCEE RLMAPDALRARFPWLNVDDLAAGAYGERGEGWFDGYGLVQALRRKAQSLGARYLAAEVVG EEECCHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVREGRRITQVVTADGERHPCDTVVNAAGAWAKRIAALAGIELPVHARRRSIFNVSSPAR HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHH LGACPLLVDPGGVYFRPEGRTYLCGSSPSPAHDADDLPLDEVDHALFDEVIWPALAHRVP HCCCEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC GFEALRVERSWSGYYEYNVFDHNAIIGYHPELENCVFANGFSGHGLQQGPATGRGVSELI CCCEEEEECCCCCEEEEEEEECCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH LNGRYTSLDLSELDWRRVLERRPIVEKNVV HCCCCCCCCHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SSRIVVVGGGVIGSATAYFLRASDPSASVTVIERDPTYARSSSALSAASIRQQFSTPLS CCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHH IRMSLFGITFLRELGERLAVGGERPSIGLHEGGYLFLATPAGEATLRENHALQLAEGAQI HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCEE RLMAPDALRARFPWLNVDDLAAGAYGERGEGWFDGYGLVQALRRKAQSLGARYLAAEVVG EEECCHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVREGRRITQVVTADGERHPCDTVVNAAGAWAKRIAALAGIELPVHARRRSIFNVSSPAR HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHH LGACPLLVDPGGVYFRPEGRTYLCGSSPSPAHDADDLPLDEVDHALFDEVIWPALAHRVP HCCCEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC GFEALRVERSWSGYYEYNVFDHNAIIGYHPELENCVFANGFSGHGLQQGPATGRGVSELI CCCEEEEECCCCCEEEEEEEECCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH LNGRYTSLDLSELDWRRVLERRPIVEKNVV HCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]