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The map label for this gene is soxC [H]

Identifier: 238025133

GI number: 238025133

Start: 2246696

End: 2247970

Strand: Reverse

Name: soxC [H]

Synonym: bglu_2g17980

Alternate gene names: 238025133

Gene position: 2247970-2246696 (Counterclockwise)

Preceding gene: 238025136

Following gene: 238025130

Centisome position: 79.51

GC content: 71.84

Gene sequence:

>1275_bases
ATGTCCACGCCCGACCTCATCACGCCCCGTGCTCCGGCCGTCGACGCACCGGCCGGCGCTGCCGCGTCCGCCCCCGCGTT
TGATGCCGCGCCCGCGCACCGAATCACGTCCGACCAGGAGGCGATCGAGGTGGCCCGCGAACTGGCCGAGCGCCTGGCGG
CCGGCGCGATCGAGCGCGACCGCGAGCGCCGGCTGCCGCGCGAGGAGATCGAATGGTTCTCGCGCTCGGGGCTGTGGGCG
ATCACGGTGCCGAAGGCCTACGGCGGTGCGGGCGTGTCGTTCGTCACCCTGGTCGAGGTGATCCGGCTGATCTCGGCGGC
CGACCCGTCGCTCGGCCAGTTGCCGCAGAACCACTTCGGGCTGGTGGACGTGATCGCGCTGACCGGCAGCGAGGCGCAGA
AGCGCGCGTTCTTCGCCGAGGTGCTGGCCGGCCGGCGCTTCGGCAACGGCTTCTCGGAGAAGGGTACGAAGCATGTGCTC
GACCTGAAGACGACGATCGTGCGCGACGGCGACCACTGGCGCGTAAACGGCACCAAGTTCTATTCCACGGGCGCGCTGTT
CGCGCACTACGTGCCGGTGCTCGGCCTCGACGCCGACCGCCAGGCGTGGCTCGCCTACGTTCCGAGCGGCACGCCCGGGC
TGACCGTGATCGACGACTGGTCGGGCTTCGGCCAGCGCACCACGGCGAGCGGCACGGTGCGGCTGGAGCAGGTGGTGGTG
CCCGACTCGCACGTGTTTCCGGCGCAGCGCGTGTCGGACCAGCCGACCCTGAACGGCCCGCTTTCGCAGATCCTCCAGGC
CGCGATCGACGCCGGCATCGCGCGGGCGGCGCTCGACGATACGCTGCGCTTCGTGCGCGAGCGCTCGCGGCCGTGGGTGG
ACAGCGGCGTGGCGCGCGCGGCCGACGATCCGTTGACGCTGAGCGAGACCGGCAAGCTGGTGATCTCGCTGCACGCCGCC
GACGCGCTGCTCGACCGCGCGGCGCGCACGCTCGACGCGCTGGCCGCGCGCGGCGAGCTGAGCGACGAGGATGTTGCGCG
CGCATCGGTCGAGGTGGGCGAGGCCAAGGTGCTGACCACCGAGGCCGCGCTGCTCGCGAGCCAGAAGCTGCTGGAACTGG
CGGGCACGCAGGCCACGCTCGCCGTGTACGGCCTCGACCGGCACTGGCGCAACGCGCGCACGCACACGCTGCACGATCCG
GTGCGCTGGAAATACCATCTGGTCGGCAATTACTACCTGAACGGCGCGAGGCCGGCCCGGCATGCGTGGAATTGA

Upstream 100 bases:

>100_bases
TCGGCACCGCGCCGCCGGAATATCGATTCCCGAATCGATCGTTTTGGCGCGCCGCGGGCCGTTGATAGATTGGCGTTTCG
TTCCCCATACGGAGATGCCG

Downstream 100 bases:

>100_bases
TACCGATGCACGCCGGCACTCGATGGTGGACAGACGTGTCGGTCTATCGGGAGGCGGTTGATCGGCTGTCCTGACGGACG
GAGGGCGAGTCGCCAGGCCG

Product: acyl-CoA dehydrogenase

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MSTPDLITPRAPAVDAPAGAAASAPAFDAAPAHRITSDQEAIEVARELAERLAAGAIERDRERRLPREEIEWFSRSGLWA
ITVPKAYGGAGVSFVTLVEVIRLISAADPSLGQLPQNHFGLVDVIALTGSEAQKRAFFAEVLAGRRFGNGFSEKGTKHVL
DLKTTIVRDGDHWRVNGTKFYSTGALFAHYVPVLGLDADRQAWLAYVPSGTPGLTVIDDWSGFGQRTTASGTVRLEQVVV
PDSHVFPAQRVSDQPTLNGPLSQILQAAIDAGIARAALDDTLRFVRERSRPWVDSGVARAADDPLTLSETGKLVISLHAA
DALLDRAARTLDALAARGELSDEDVARASVEVGEAKVLTTEAALLASQKLLELAGTQATLAVYGLDRHWRNARTHTLHDP
VRWKYHLVGNYYLNGARPARHAWN

Sequences:

>Translated_424_residues
MSTPDLITPRAPAVDAPAGAAASAPAFDAAPAHRITSDQEAIEVARELAERLAAGAIERDRERRLPREEIEWFSRSGLWA
ITVPKAYGGAGVSFVTLVEVIRLISAADPSLGQLPQNHFGLVDVIALTGSEAQKRAFFAEVLAGRRFGNGFSEKGTKHVL
DLKTTIVRDGDHWRVNGTKFYSTGALFAHYVPVLGLDADRQAWLAYVPSGTPGLTVIDDWSGFGQRTTASGTVRLEQVVV
PDSHVFPAQRVSDQPTLNGPLSQILQAAIDAGIARAALDDTLRFVRERSRPWVDSGVARAADDPLTLSETGKLVISLHAA
DALLDRAARTLDALAARGELSDEDVARASVEVGEAKVLTTEAALLASQKLLELAGTQATLAVYGLDRHWRNARTHTLHDP
VRWKYHLVGNYYLNGARPARHAWN
>Mature_423_residues
STPDLITPRAPAVDAPAGAAASAPAFDAAPAHRITSDQEAIEVARELAERLAAGAIERDRERRLPREEIEWFSRSGLWAI
TVPKAYGGAGVSFVTLVEVIRLISAADPSLGQLPQNHFGLVDVIALTGSEAQKRAFFAEVLAGRRFGNGFSEKGTKHVLD
LKTTIVRDGDHWRVNGTKFYSTGALFAHYVPVLGLDADRQAWLAYVPSGTPGLTVIDDWSGFGQRTTASGTVRLEQVVVP
DSHVFPAQRVSDQPTLNGPLSQILQAAIDAGIARAALDDTLRFVRERSRPWVDSGVARAADDPLTLSETGKLVISLHAAD
ALLDRAARTLDALAARGELSDEDVARASVEVGEAKVLTTEAALLASQKLLELAGTQATLAVYGLDRHWRNARTHTLHDPV
RWKYHLVGNYYLNGARPARHAWN

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4501859, Length=383, Percent_Identity=24.5430809399478, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI4557233, Length=379, Percent_Identity=27.1767810026385, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226958412, Length=257, Percent_Identity=25.6809338521401, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI226958414, Length=222, Percent_Identity=24.7747747747748, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17534899, Length=378, Percent_Identity=22.4867724867725, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508101, Length=356, Percent_Identity=23.0337078651685, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17506239, Length=242, Percent_Identity=26.0330578512397, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21356377, Length=361, Percent_Identity=25.4847645429363, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666513, Length=274, Percent_Identity=24.4525547445255, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24646207, Length=271, Percent_Identity=28.4132841328413, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 45816; Mature: 45685

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPDLITPRAPAVDAPAGAAASAPAFDAAPAHRITSDQEAIEVARELAERLAAGAIERD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RERRLPREEIEWFSRSGLWAITVPKAYGGAGVSFVTLVEVIRLISAADPSLGQLPQNHFG
HHHCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
LVDVIALTGSEAQKRAFFAEVLAGRRFGNGFSEKGTKHVLDLKTTIVRDGDHWRVNGTKF
CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEEHEEECCCEEEECCEEE
YSTGALFAHYVPVLGLDADRQAWLAYVPSGTPGLTVIDDWSGFGQRTTASGTVRLEQVVV
EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEC
PDSHVFPAQRVSDQPTLNGPLSQILQAAIDAGIARAALDDTLRFVRERSRPWVDSGVARA
CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHC
ADDPLTLSETGKLVISLHAADALLDRAARTLDALAARGELSDEDVARASVEVGEAKVLTT
CCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEH
EAALLASQKLLELAGTQATLAVYGLDRHWRNARTHTLHDPVRWKYHLVGNYYLNGARPAR
HHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCC
HAWN
CCCC
>Mature Secondary Structure 
STPDLITPRAPAVDAPAGAAASAPAFDAAPAHRITSDQEAIEVARELAERLAAGAIERD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RERRLPREEIEWFSRSGLWAITVPKAYGGAGVSFVTLVEVIRLISAADPSLGQLPQNHFG
HHHCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
LVDVIALTGSEAQKRAFFAEVLAGRRFGNGFSEKGTKHVLDLKTTIVRDGDHWRVNGTKF
CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEEHEEECCCEEEECCEEE
YSTGALFAHYVPVLGLDADRQAWLAYVPSGTPGLTVIDDWSGFGQRTTASGTVRLEQVVV
EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEC
PDSHVFPAQRVSDQPTLNGPLSQILQAAIDAGIARAALDDTLRFVRERSRPWVDSGVARA
CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHC
ADDPLTLSETGKLVISLHAADALLDRAARTLDALAARGELSDEDVARASVEVGEAKVLTT
CCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEH
EAALLASQKLLELAGTQATLAVYGLDRHWRNARTHTLHDPVRWKYHLVGNYYLNGARPAR
HHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCC
HAWN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]