Click here to switch to the map view.

The map label for this gene is xseB [H]

Identifier: 238024941

GI number: 238024941

Start: 2016511

End: 2016804

Strand: Reverse

Name: xseB [H]

Synonym: bglu_2g15960

Alternate gene names: 238024941

Gene position: 2016804-2016511 (Counterclockwise)

Preceding gene: 238024944

Following gene: 238024940

Centisome position: 71.33

GC content: 67.69

Gene sequence:

>294_bases
ATGGCGAAAAACGCAACCCCGGACGCCGCGGCGTCGGGTGCCGGTCCCGATTCGGCGCCGGCTTCCTACGAAACCGCGCT
CGAGGAACTCGAGACGCTGGTCGCACGGATGGAGGGTGGCGCCCTGAGCCTCGAGGATTCGCTGAGCGCATATCGCCGCG
GCGCAGTCCTCGTTGCGTTTTGCCAACAGCAGCTCGACAAGGTGGAGCAGCAGGTGCGCGTGCTCGACGGGGCCGCGCTG
AAGCCGCACTCCACCGGCGTGGCCGCTACGGACGGCGAAGACGACGATCTATGA

Upstream 100 bases:

>100_bases
GCGGTCCGCACCGACGGGGCGGATCGGCTGCGCGGACGGGGCCCCGAATCCGCTTTTGCCGTAGAATGTCCGACTTGTTT
TTAATTTGACACCTCGTCCC

Downstream 100 bases:

>100_bases
CATTCCAACAATGGATGCGCGCGGTGCTGGCGCGCGTCGAAGATGCGCTTGGCCACTATCTGCCGGCCGACACGGTGGTT
CCCGGCACGCTGCACGAAGC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MAKNATPDAAASGAGPDSAPASYETALEELETLVARMEGGALSLEDSLSAYRRGAVLVAFCQQQLDKVEQQVRVLDGAAL
KPHSTGVAATDGEDDDL

Sequences:

>Translated_97_residues
MAKNATPDAAASGAGPDSAPASYETALEELETLVARMEGGALSLEDSLSAYRRGAVLVAFCQQQLDKVEQQVRVLDGAAL
KPHSTGVAATDGEDDDL
>Mature_96_residues
AKNATPDAAASGAGPDSAPASYETALEELETLVARMEGGALSLEDSLSAYRRGAVLVAFCQQQLDKVEQQVRVLDGAALK
PHSTGVAATDGEDDDL

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 10005; Mature: 9874

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNATPDAAASGAGPDSAPASYETALEELETLVARMEGGALSLEDSLSAYRRGAVLVAF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
CQQQLDKVEQQVRVLDGAALKPHSTGVAATDGEDDDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKNATPDAAASGAGPDSAPASYETALEELETLVARMEGGALSLEDSLSAYRRGAVLVAF
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
CQQQLDKVEQQVRVLDGAALKPHSTGVAATDGEDDDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA